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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159958 (87 seq.)
>W1710777899
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
866379
866455
+
Ile
GAT
[ENA]
¡û
>W1710777926
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
779208
779132
-
Ile
GAT
[ENA]
¡û
>W1710777928
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
773238
773162
-
Ile
GAT
[ENA]
¡û
>W1710777930
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
767268
767192
-
Ile
GAT
[ENA]
¡û
>W1710777932
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
570771
570695
-
Ile
GAT
[ENA]
¡û
>W1711303106
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
675341
675417
+
Ile
GAT
[ENA]
¡û
>W1711682975
MRYB01000024
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
1756
1832
+
Ile
GAT
[ENA]
¡û
>WENV180101244
OAOU01011551
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
575
499
-
Ile
GAT
[ENA]
¡û
>W141233992
BAWG01000025
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
1997
2073
+
Ile
GAT
[ENA]
¡û
>W141234029
BAWH01000038
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
2056
2132
+
Ile
GAT
[ENA]
¡û
>WENV182542107
OJAV01003237
[OJAV] seawater metagenome; Sea water
2802
2726
-
Ile
GAT
[ENA]
¡û
>WENV182545755
OJBN01021152
[OJBN] seawater metagenome; Sea water
254
330
+
Ile
GAT
[ENA]
¡û
>WENV182549768
OJBZ01000006
[OJBZ] seawater metagenome; Sea water
202716
202640
-
Ile
GAT
[ENA]
¡û
>WENV182562554
OJDZ01010289
[OJDZ] seawater metagenome; Sea water
926
850
-
Ile
GAT
[ENA]
¡û
>WENV182591929
OJIO01018904
[OJIO] seawater metagenome; Sea water
131
207
+
Ile
GAT
[ENA]
¡û
>WENV170024963
BCQL01171011
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
360
284
-
Ile
GAT
[ENA]
¡û
>WENV170674369
LAZR01060647
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
963
887
-
Ile
GAT
[ENA]
¡û
>W1910891638
NEXR01000003
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
1618
1694
+
Ile
GAT
[ENA]
¡û
>W1911534870
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1868130
1868206
+
Ile
GAT
[ENA]
¡û
>W1911534886
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1033641
1033565
-
Ile
GAT
[ENA]
¡û
>W1911534888
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
825303
825227
-
Ile
GAT
[ENA]
¡û
>W1810155442
PJAS01000006
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
3667
3591
-
Ile
GAT
[ENA]
¡û
>W1810155486
PJAT01000026
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
1861
1937
+
Ile
GAT
[ENA]
¡û
>W1810156201
PJBD01000113
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
3716
3640
-
Ile
GAT
[ENA]
¡û
>W1810156314
PJBF01000009
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
3716
3640
-
Ile
GAT
[ENA]
¡û
>W1810156417
PJBH01000014
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
2059
2135
+
Ile
GAT
[ENA]
¡û
>W1810157237
PJBU01000020
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
2058
2134
+
Ile
GAT
[ENA]
¡û
>W1810692688
QLKS01000014
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
1845
1921
+
Ile
GAT
[ENA]
¡û
>W2010569982
JAATTV010000031
Gammaproteobacteria
Psychrobacter sp. BI730 [JAATTV]
2045
2121
+
Ile
GAT
[ENA]
¡û
>W2010688601
JACGUN010000048
Gammaproteobacteria
Psychrobacter sp. Urea-trap-20 [JACGUN]
3716
3640
-
Ile
GAT
[ENA]
¡û
>W2010688648
JACGUO010000046
Gammaproteobacteria
Psychrobacter sp. Urea-trap-19 [JACGUO]
2059
2135
+
Ile
GAT
[ENA]
¡û
>W2010688685
JACGUP010000034
Gammaproteobacteria
Psychrobacter sp. Urea-trap-18 [JACGUP]
3716
3640
-
Ile
GAT
[ENA]
¡û
>W2010688735
JACGUQ010000050
Gammaproteobacteria
Psychrobacter sp. Urea-trap-16 [JACGUQ]
2059
2135
+
Ile
GAT
[ENA]
¡û
>W2010692995
JACGYX010000021
Gammaproteobacteria
Psychrobacter sp. GP33 [JACGYX]
3688
3612
-
Ile
GAT
[ENA]
¡û
>W2010956508
NEXR01000003
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
1618
1694
+
Ile
GAT
[ENA]
¡û
>W2011167640
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1868130
1868206
+
Ile
GAT
[ENA]
¡û
>W2011167656
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1033641
1033565
-
Ile
GAT
[ENA]
¡û
>W2011167658
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
825303
825227
-
Ile
GAT
[ENA]
¡û
>W2011646935
SNVH01000062
Gammaproteobacteria
Psychrobacter sp. 230 [SNVH]
186
262
+
Ile
GAT
[ENA]
¡û
>W2012217203
VZIZ01000037
Gammaproteobacteria
Psychrobacter nivimaris LAMA 639 [VZIZ]
1661
1737
+
Ile
GAT
[ENA]
¡û
>W2110105736
CAJGYR010000002
Gammaproteobacteria
Psychrobacter adeliensis [CAJGYR]
353820
353744
-
Ile
GAT
[ENA]
¡û
>W2110105750
CAJGYR010000004
Gammaproteobacteria
Psychrobacter adeliensis [CAJGYR]
255871
255795
-
Ile
GAT
[ENA]
¡û
>W2110105752
CAJGYR010000004
Gammaproteobacteria
Psychrobacter adeliensis [CAJGYR]
249887
249811
-
Ile
GAT
[ENA]
¡û
>W2110105754
CAJGYR010000004
Gammaproteobacteria
Psychrobacter adeliensis [CAJGYR]
243904
243828
-
Ile
GAT
[ENA]
¡û
>W2110105757
CAJGYS010000001
Gammaproteobacteria
Psychrobacter faecalis [CAJGYS]
175036
175112
+
Ile
GAT
[ENA]
¡û
>W2110105794
CAJGYS010000002
Gammaproteobacteria
Psychrobacter faecalis [CAJGYS]
287519
287443
-
Ile
GAT
[ENA]
¡û
>W2110105886
CAJGYU010000046
Gammaproteobacteria
Psychrobacter celer [CAJGYU]
2000
2076
+
Ile
GAT
[ENA]
¡û
>W2110106021
CAJGYX010000015
Gammaproteobacteria
Psychrobacter cibarius [CAJGYX]
5902
5978
+
Ile
GAT
[ENA]
¡û
>W2110106307
CAJGZF010000001
Gammaproteobacteria
Psychrobacter aquimaris [CAJGZF]
847695
847771
+
Ile
GAT
[ENA]
¡û
>W2110106334
CAJGZF010000003
Gammaproteobacteria
Psychrobacter aquimaris [CAJGZF]
348375
348299
-
Ile
GAT
[ENA]
¡û
>W2110106339
CAJGZF010000016
Gammaproteobacteria
Psychrobacter aquimaris [CAJGZF]
3432
3356
-
Ile
GAT
[ENA]
¡û
>W2110106506
CAJGZJ010000041
Gammaproteobacteria
Psychrobacter immobilis [CAJGZJ]
2115
2191
+
Ile
GAT
[ENA]
¡û
>W2110106684
CAJGZN010000041
Gammaproteobacteria
Psychrobacter immobilis [CAJGZN]
3674
3598
-
Ile
GAT
[ENA]
¡û
>W2110106995
CAJGZU010000045
Gammaproteobacteria
Psychrobacter immobilis [CAJGZU]
1756
1832
+
Ile
GAT
[ENA]
¡û
>W2110107347
CAJHAC010000082
Gammaproteobacteria
Psychrobacter immobilis [CAJHAC]
463
387
-
Ile
GAT
[ENA]
¡û
>W2110107529
CAJHAG010000043
Gammaproteobacteria
Psychrobacter maritimus [CAJHAG]
1749
1825
+
Ile
GAT
[ENA]
¡û
>W2110107571
CAJHAH010000015
Gammaproteobacteria
Psychrobacter luti [CAJHAH]
1993
2069
+
Ile
GAT
[ENA]
¡û
>W2110107611
CAJHAI010000030
Gammaproteobacteria
Psychrobacter marincola [CAJHAI]
1449
1525
+
Ile
GAT
[ENA]
¡û
>W2110107658
CAJHAK010000001
Gammaproteobacteria
Psychrobacter namhaensis [CAJHAK]
417640
417564
-
Ile
GAT
[ENA]
¡û
>W2110107676
CAJHAK010000002
Gammaproteobacteria
Psychrobacter namhaensis [CAJHAK]
323389
323313
-
Ile
GAT
[ENA]
¡û
>W2110107739
CAJHAL010000079
Gammaproteobacteria
Psychrobacter nivimaris [CAJHAL]
306
382
+
Ile
GAT
[ENA]
¡û
>W2110107741
CAJHAL010000080
Gammaproteobacteria
Psychrobacter nivimaris [CAJHAL]
363
287
-
Ile
GAT
[ENA]
¡û
>W2110108012
CAJHAR010000101
Gammaproteobacteria
Psychrobacter piscatorii [CAJHAR]
142
218
+
Ile
GAT
[ENA]
¡û
>W2110108054
CAJHAS010000014
Gammaproteobacteria
Psychrobacter proteolyticus [CAJHAS]
1449
1525
+
Ile
GAT
[ENA]
¡û
>W2110108804
CAJHBJ010000067
Gammaproteobacteria
Psychrobacter sp. HII-4 [CAJHBJ]
3428
3352
-
Ile
GAT
[ENA]
¡û
>W2110108895
CAJHBL010000012
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [CAJHBL]
3312
3236
-
Ile
GAT
[ENA]
¡û
>W2110109025
CAJHBO010000058
Gammaproteobacteria
Psychrobacter sp. Pi2-1 [CAJHBO]
141
217
+
Ile
GAT
[ENA]
¡û
>W2110109191
CAJHBS010000043
Gammaproteobacteria
Psychrobacter sp. Pi2-52 [CAJHBS]
2059
2135
+
Ile
GAT
[ENA]
¡û
>W2110168468
JABASS010000028
Gammaproteobacteria
Psychrobacter namhaensis DSM 16330 [JABASS]
2104
2180
+
Ile
GAT
[ENA]
¡û
>W2110168552
JABASU010000044
Gammaproteobacteria
Psychrobacter celer DSM 23510 [JABASU]
3585
3509
-
Ile
GAT
[ENA]
¡û
>W2110188878
JABUZJ010000046
Gammaproteobacteria
Psychrobacter namhaensis 1439 [JABUZJ]
254
330
+
Ile
GAT
[ENA]
¡û
>W2110521048
JAGBKN010000045
Gammaproteobacteria
Psychrobacter sp. F2608 [JAGBKN]
2072
2148
+
Ile
GAT
[ENA]
¡û
>C211152411
CP061739
Gammaproteobacteria
Psychrobacter sp. 28M-43 [CP061739]
720936
721012
+
Ile
GAT
-
¡û
>C211152424
CP061739
Gammaproteobacteria
Psychrobacter sp. 28M-43 [CP061739]
3042383
3042307
-
Ile
GAT
-
¡û
>C211152426
CP061739
Gammaproteobacteria
Psychrobacter sp. 28M-43 [CP061739]
3036409
3036333
-
Ile
GAT
-
¡û
>C211152428
CP061739
Gammaproteobacteria
Psychrobacter sp. 28M-43 [CP061739]
3030435
3030359
-
Ile
GAT
-
¡û
>C211152430
CP061739
Gammaproteobacteria
Psychrobacter sp. 28M-43 [CP061739]
2860463
2860387
-
Ile
GAT
-
¡û
>W2110766355
RRYW01000133
Gammaproteobacteria
Psychrobacter sp. FME6 [RRYW]
2002
2078
+
Ile
GAT
[ENA]
¡û
>W2110766397
RRYX01000146
Gammaproteobacteria
Psychrobacter sp. FME5 [RRYX]
2032
2108
+
Ile
GAT
[ENA]
¡û
>W1610642085
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
866379
866455
+
Ile
GAT
[ENA]
¡û
>W1610642112
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
779208
779132
-
Ile
GAT
[ENA]
¡û
>W1610642114
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
773238
773162
-
Ile
GAT
[ENA]
¡û
>W1610642116
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
767268
767192
-
Ile
GAT
[ENA]
¡û
>W1610642118
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
570771
570695
-
Ile
GAT
[ENA]
¡û
>WENV078394
AAGA01006494
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
383
459
+
Ile
GAT
[ENA]
>WENV078461
AAGA01016769
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
76
152
+
Ile
GAT
[ENA]
>W1710767169
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
789432
789356
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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