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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159974 (64 seq.)
>W1710859344
LMCB01000044
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
25641
25717
+
Pro
GGG
[ENA]
¡û
>W1710859388
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
296412
296488
+
Pro
GGG
[ENA]
¡û
>W1710859445
LMCD01000020
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
388379
388455
+
Pro
GGG
[ENA]
¡û
>W1710859508
LMCE01000088
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
271161
271237
+
Pro
GGG
[ENA]
¡û
>W1710859575
LMCF01000151
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
15327
15403
+
Pro
GGG
[ENA]
¡û
>W1710859635
LMCG01000072
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
52471
52547
+
Pro
GGG
[ENA]
¡û
>W1710859694
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
35145
35069
-
Pro
GGG
[ENA]
¡û
>W1710859764
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
249864
249940
+
Pro
GGG
[ENA]
¡û
>W1710859785
LMCJ01000006
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
90114
90190
+
Pro
GGG
[ENA]
¡û
>W1710859866
LMCK01000100
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
17249
17325
+
Pro
GGG
[ENA]
¡û
>W1711167035
LVVZ01000019
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
347153
347229
+
Pro
GGG
[ENA]
¡û
>W1711334242
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
115616
115540
-
Pro
GGG
[ENA]
¡û
>W1711424937
MIEL01000001
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
209106
209030
-
Pro
GGG
[ENA]
¡û
>W131229335
AUGS01000005
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
79374
79298
-
Pro
GGG
[ENA]
¡û
>w020415
AAUW01000001
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
418323
418245
-
Pro
GGG
[ENA]
¡û
>WENV170014537
AYRH01001924
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
139
63
-
Pro
GGG
[ENA]
¡û
>W09112016
ABXL01000039
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
15466
15542
+
Pro
GGG
[ENA]
¡û
>W1910285226
FREX01000012
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
93650
93726
+
Pro
GGG
[ENA]
¡û
>W1910989677
NKQT01000002
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
923650
923726
+
Pro
GGG
[ENA]
¡û
>W1911538971
OMPG01000020
Alphaproteobacteria
Pseudovibrio sp. AU243 [OMPG]
269000
269076
+
Pro
GGG
[ENA]
¡û
>W1810232558
PPCN01000011
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
181178
181254
+
Pro
GGG
[ENA]
¡û
>W2010395489
FREX01000012
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
93650
93726
+
Pro
GGG
[ENA]
¡û
>W2010994704
NKQT01000002
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
923650
923726
+
Pro
GGG
[ENA]
¡û
>W2011169201
OMPG01000020
Alphaproteobacteria
Pseudovibrio sp. AU243 [OMPG]
269000
269076
+
Pro
GGG
[ENA]
¡û
>W2012437694
WTVA01000001
Alphaproteobacteria
Sneathiella chungangensis KCTC 32476 [WTVA]
802591
802515
-
Pro
GGG
[ENA]
¡û
>W2110019223
BMCR01000001
Alphaproteobacteria
Stappia taiwanensis CCM 7757 [BMCR]
252103
252027
-
Pro
GGG
[ENA]
¡û
>W2110047319
BMXE01000004
Alphaproteobacteria
Pseudovibrio japonicus KCTC 12861 [BMXE]
506571
506647
+
Pro
GGG
[ENA]
¡û
>W2110177641
JABFCZ010000002
Alphaproteobacteria
Roseibium aggregatum PHM038 [JABFCZ]
206564
206488
-
Pro
GGG
[ENA]
¡û
>W2110363127
JADOUJ010000027
Alphaproteobacteria
Labrenzia sp. EL_142 [JADOUJ]
32829
32905
+
Pro
GGG
[ENA]
¡û
>W2110706379
JAIVMF010000001
Alphaproteobacteria
Stappia stellulata SN27-3 [JAIVMF]
110231
110307
+
Pro
GGG
[ENA]
¡û
>W2110706429
JAIVMG010000001
Alphaproteobacteria
Stappia indica SN13-18 [JAIVMG]
572382
572458
+
Pro
GGG
[ENA]
¡û
>C231235871
CP087156
Alphaproteobacteria
Roseibium aggregatum LZB033 [CP087156]
3059606
3059530
-
Pro
GGG
-
¡û
>W2110761411
QTKU01000001
Alphaproteobacteria
Roseibium polysiphoniae AESS21 [QTKU]
457352
457276
-
Pro
GGG
[ENA]
¡û
>C231562582
CP114786
Alphaproteobacteria
Roseibium sp. Sym1 [CP114786]
5816235
5816311
+
Pro
GGG
-
¡û
>C241094847
CP045328
Alphaproteobacteria
Labrenzia sp. THAF191b [CP045328]
5207682
5207758
+
Pro
GGG
-
¡û
>W2110804743
WYEU01000002
Alphaproteobacteria
Sneathiella sp. P13V-1 [WYEU]
373716
373792
+
Pro
GGG
[ENA]
¡û
>C241242707
CP120863
Alphaproteobacteria
Roseibium porphyridii KMA01 [CP120863]
4014440
4014516
+
Pro
GGG
-
¡û
>W11135877
AEFL01000075
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
115151
115227
+
Pro
GGG
[ENA]
¡û
>C121006675
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
3877017
3877093
+
Pro
GGG
[Ensembl]
¡û
>W1610042616
BAXV01000072
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
10680
10756
+
Pro
GGG
[ENA]
¡û
>W1610042866
BAZK01000005
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
209809
209733
-
Pro
GGG
[ENA]
¡û
>W1610092208
CXWD01000004
Alphaproteobacteria
Roseibium alexandrii [CXWD]
83564
83640
+
Pro
GGG
[ENA]
¡û
>W1610092265
CXWE01000006
Alphaproteobacteria
Roseibium album alba [CXWE]
511608
511684
+
Pro
GGG
[ENA]
¡û
>W1610585617
LCWX01000200
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
122906
122830
-
Pro
GGG
[ENA]
¡û
>W1610721690
LMCB01000044
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
25641
25717
+
Pro
GGG
[ENA]
¡û
>W1610721734
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
296412
296488
+
Pro
GGG
[ENA]
¡û
>W1610721791
LMCD01000020
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
388379
388455
+
Pro
GGG
[ENA]
¡û
>W1610721854
LMCE01000088
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
271161
271237
+
Pro
GGG
[ENA]
¡û
>W1610721921
LMCF01000151
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
15327
15403
+
Pro
GGG
[ENA]
¡û
>W1610721981
LMCG01000072
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
52471
52547
+
Pro
GGG
[ENA]
¡û
>W1610722040
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
35145
35069
-
Pro
GGG
[ENA]
¡û
>W1610722110
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
249864
249940
+
Pro
GGG
[ENA]
¡û
>W1610722131
LMCJ01000006
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
90114
90190
+
Pro
GGG
[ENA]
¡û
>W1610722212
LMCK01000100
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
17249
17325
+
Pro
GGG
[ENA]
¡û
>W1611066209
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
115616
115540
-
Pro
GGG
[ENA]
¡û
>W1710039710
BAXV01000072
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
10680
10756
+
Pro
GGG
[ENA]
¡û
>W1710040026
BAZK01000005
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
209809
209733
-
Pro
GGG
[ENA]
¡û
>W1710095565
CXWD01000004
Alphaproteobacteria
Roseibium alexandrii [CXWD]
83564
83640
+
Pro
GGG
[ENA]
¡û
>W1710095622
CXWE01000006
Alphaproteobacteria
Roseibium album alba [CXWE]
511608
511684
+
Pro
GGG
[ENA]
¡û
>W1710527510
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
1975676
1975752
+
Pro
GGG
[ENA]
¡û
>W1710550695
FOFM01000004
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
166976
166900
-
Pro
GGG
[ENA]
¡û
>W1710567042
FOSK01000008
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
94970
94894
-
Pro
GGG
[ENA]
¡û
>W1710577894
FPBD01000004
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
210395
210319
-
Pro
GGG
[ENA]
¡û
>W1710704808
LCWX01000200
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
122906
122830
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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