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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160117 (111 seq.)
>W1711065256
LSBQ01000006
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
118397
118473
+
Arg
ACG
[ENA]
¡û
>W1711065257
LSBQ01000006
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
118503
118579
+
Arg
ACG
[ENA]
¡û
>W1711356883
MDGT01000002
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
118573
118649
+
Arg
ACG
[ENA]
¡û
>W1711356884
MDGT01000002
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
118679
118755
+
Arg
ACG
[ENA]
¡û
>W131045179
AMRG01000006
Gammaproteobacteria
Idiomarina xiamenensis 10-D-4 [AMRG]
120952
120876
-
Arg
ACG
[ENA]
¡û
>W131045180
AMRG01000006
Gammaproteobacteria
Idiomarina xiamenensis 10-D-4 [AMRG]
120855
120779
-
Arg
ACG
[ENA]
¡û
>W131171058
ARFX01000041
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
64454
64378
-
Arg
ACG
[ENA]
¡û
>W131230248
AUHL01000005
Gammaproteobacteria
Pseudidiomarina sediminum DSM 21906 [AUHL]
269734
269658
-
Arg
ACG
[ENA]
¡û
>W131230249
AUHL01000005
Gammaproteobacteria
Pseudidiomarina sediminum DSM 21906 [AUHL]
269633
269557
-
Arg
ACG
[ENA]
¡û
>W131239263
BANL01000026
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
46015
45939
-
Arg
ACG
[ENA]
¡û
>C011043
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
1869281
1869205
-
Arg
ACG
[Ensembl]
¡û
>w012949
AAMX01000013
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
37390
37468
+
Arg
ACG
[ENA]
¡û
>w012948
AAMX01000013
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
37284
37362
+
Arg
ACG
[ENA]
¡û
>WENV181233515
OFET01000002
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
217472
217548
+
Arg
ACG
[ENA]
¡û
>WENV181233516
OFET01000002
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
217595
217671
+
Arg
ACG
[ENA]
¡û
>WENV181234172
OFEU01000002
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
217472
217548
+
Arg
ACG
[ENA]
¡û
>WENV181234173
OFEU01000002
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
217595
217671
+
Arg
ACG
[ENA]
¡û
>WENV170136239
CENV01014832
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9139
9063
-
Arg
ACG
[ENA]
¡û
>WENV170283595
CERU01038305
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
15603
15679
+
Arg
ACG
[ENA]
¡û
>WENV170345426
CETF01006505
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2198
2274
+
Arg
ACG
[ENA]
¡û
>WENV170475864
CEVI01043110
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
243
319
+
Arg
ACG
[ENA]
¡û
>WENV170925065
MDTG01076856
[MDTG] marine metagenome; seawater
4028
3952
-
Arg
ACG
[ENA]
¡û
>C181146726
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
1843949
1843873
-
Arg
ACG
-
¡û
>W1911584891
PIPM01000003
Gammaproteobacteria
Aliidiomarina sanyensis GYP-17 [PIPM]
173066
172990
-
Arg
ACG
[ENA]
¡û
>W1911584892
PIPM01000003
Gammaproteobacteria
Aliidiomarina sanyensis GYP-17 [PIPM]
172965
172889
-
Arg
ACG
[ENA]
¡û
>W1911585203
PIPS01000002
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
13355
13431
+
Arg
ACG
[ENA]
¡û
>W1911585246
PIPT01000003
Gammaproteobacteria
Idiomarina aquimaris SW15 [PIPT]
103786
103862
+
Arg
ACG
[ENA]
¡û
>W1911585247
PIPT01000003
Gammaproteobacteria
Idiomarina aquimaris SW15 [PIPT]
103902
103978
+
Arg
ACG
[ENA]
¡û
>W1911585353
PIPV01000006
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
118475
118551
+
Arg
ACG
[ENA]
¡û
>W1911585354
PIPV01000006
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
118584
118660
+
Arg
ACG
[ENA]
¡û
>W1911585387
PIPW01000001
Gammaproteobacteria
Idiomarina halophila BH195 [PIPW]
1165304
1165228
-
Arg
ACG
[ENA]
¡û
>W1911585388
PIPW01000001
Gammaproteobacteria
Idiomarina halophila BH195 [PIPW]
1165201
1165125
-
Arg
ACG
[ENA]
¡û
>W1911585420
PIPX01000001
Gammaproteobacteria
Idiomarina homiensis PO-M2 [PIPX]
103757
103833
+
Arg
ACG
[ENA]
¡û
>W1911585421
PIPX01000001
Gammaproteobacteria
Idiomarina homiensis PO-M2 [PIPX]
103861
103937
+
Arg
ACG
[ENA]
¡û
>W1911585487
PIPY01000006
Gammaproteobacteria
Idiomarina insulisalsae CVS-6 [PIPY]
101939
102015
+
Arg
ACG
[ENA]
¡û
>W1911585488
PIPY01000006
Gammaproteobacteria
Idiomarina insulisalsae CVS-6 [PIPY]
102041
102117
+
Arg
ACG
[ENA]
¡û
>W1911585627
PIQB01000001
Gammaproteobacteria
Idiomarina planktonica TS-T11 [PIQB]
118595
118671
+
Arg
ACG
[ENA]
¡û
>W1911585628
PIQB01000001
Gammaproteobacteria
Idiomarina planktonica TS-T11 [PIQB]
118710
118786
+
Arg
ACG
[ENA]
¡û
>W1911585688
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
567126
567050
-
Arg
ACG
[ENA]
¡û
>W1911585808
PIQE01000002
Gammaproteobacteria
Idiomarina sediminum c121 [PIQE]
110494
110570
+
Arg
ACG
[ENA]
¡û
>W1911585809
PIQE01000002
Gammaproteobacteria
Idiomarina sediminum c121 [PIQE]
110595
110671
+
Arg
ACG
[ENA]
¡û
>W1911585841
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1176360
1176284
-
Arg
ACG
[ENA]
¡û
>W1911585842
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1176259
1176183
-
Arg
ACG
[ENA]
¡û
>W1911585953
PIQH01000009
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
56119
56195
+
Arg
ACG
[ENA]
¡û
>W1911585954
PIQH01000009
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
56226
56302
+
Arg
ACG
[ENA]
¡û
>W1810609601
QGUA01000007
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
105816
105740
-
Arg
ACG
[ENA]
¡û
>W1810671394
QJST01000007
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
118443
118519
+
Arg
ACG
[ENA]
¡û
>W1810671395
QJST01000007
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
118552
118628
+
Arg
ACG
[ENA]
¡û
>W1810706735
QMKJ01000001
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
841091
841015
-
Arg
ACG
[ENA]
¡û
>W1810706736
QMKJ01000001
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
840988
840912
-
Arg
ACG
[ENA]
¡û
>W1810758089
QPID01000002
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
533547
533623
+
Arg
ACG
[ENA]
¡û
>W1810758090
QPID01000002
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
533679
533755
+
Arg
ACG
[ENA]
¡û
>W1810785249
QRBK01000005
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
14677
14601
-
Arg
ACG
[ENA]
¡û
>W2010347836
CADCXY010000001
Gammaproteobacteria
Idiomarina sp. CECT 9734 [CADCXY]
958733
958657
-
Arg
ACG
[ENA]
¡û
>W2010347837
CADCXY010000001
Gammaproteobacteria
Idiomarina sp. CECT 9734 [CADCXY]
958629
958553
-
Arg
ACG
[ENA]
¡û
>W2011194284
PIPM01000003
Gammaproteobacteria
Aliidiomarina sanyensis GYP-17 [PIPM]
173066
172990
-
Arg
ACG
[ENA]
¡û
>W2011194285
PIPM01000003
Gammaproteobacteria
Aliidiomarina sanyensis GYP-17 [PIPM]
172965
172889
-
Arg
ACG
[ENA]
¡û
>W2011194596
PIPS01000002
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
13355
13431
+
Arg
ACG
[ENA]
¡û
>W2011194639
PIPT01000003
Gammaproteobacteria
Idiomarina aquimaris SW15 [PIPT]
103786
103862
+
Arg
ACG
[ENA]
¡û
>W2011194640
PIPT01000003
Gammaproteobacteria
Idiomarina aquimaris SW15 [PIPT]
103902
103978
+
Arg
ACG
[ENA]
¡û
>W2011194746
PIPV01000006
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
118475
118551
+
Arg
ACG
[ENA]
¡û
>W2011194747
PIPV01000006
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
118584
118660
+
Arg
ACG
[ENA]
¡û
>W2011194780
PIPW01000001
Gammaproteobacteria
Idiomarina halophila BH195 [PIPW]
1165304
1165228
-
Arg
ACG
[ENA]
¡û
>W2011194781
PIPW01000001
Gammaproteobacteria
Idiomarina halophila BH195 [PIPW]
1165201
1165125
-
Arg
ACG
[ENA]
¡û
>W2011194813
PIPX01000001
Gammaproteobacteria
Idiomarina homiensis PO-M2 [PIPX]
103757
103833
+
Arg
ACG
[ENA]
¡û
>W2011194814
PIPX01000001
Gammaproteobacteria
Idiomarina homiensis PO-M2 [PIPX]
103861
103937
+
Arg
ACG
[ENA]
¡û
>W2011194880
PIPY01000006
Gammaproteobacteria
Idiomarina insulisalsae CVS-6 [PIPY]
101939
102015
+
Arg
ACG
[ENA]
¡û
>W2011194881
PIPY01000006
Gammaproteobacteria
Idiomarina insulisalsae CVS-6 [PIPY]
102041
102117
+
Arg
ACG
[ENA]
¡û
>W2011195020
PIQB01000001
Gammaproteobacteria
Idiomarina planktonica TS-T11 [PIQB]
118595
118671
+
Arg
ACG
[ENA]
¡û
>W2011195021
PIQB01000001
Gammaproteobacteria
Idiomarina planktonica TS-T11 [PIQB]
118710
118786
+
Arg
ACG
[ENA]
¡û
>W2011195081
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
567126
567050
-
Arg
ACG
[ENA]
¡û
>W2011195201
PIQE01000002
Gammaproteobacteria
Idiomarina sediminum c121 [PIQE]
110494
110570
+
Arg
ACG
[ENA]
¡û
>W2011195202
PIQE01000002
Gammaproteobacteria
Idiomarina sediminum c121 [PIQE]
110595
110671
+
Arg
ACG
[ENA]
¡û
>W2011195234
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1176360
1176284
-
Arg
ACG
[ENA]
¡û
>W2011195235
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
1176259
1176183
-
Arg
ACG
[ENA]
¡û
>W2011195346
PIQH01000009
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
56119
56195
+
Arg
ACG
[ENA]
¡û
>W2011195347
PIQH01000009
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
56226
56302
+
Arg
ACG
[ENA]
¡û
>W2011580920
SHLY01000002
Gammaproteobacteria
Corallincola sp. 176GS2-150 [SHLY]
768969
769045
+
Arg
ACG
[ENA]
¡û
>W2011580921
SHLY01000002
Gammaproteobacteria
Corallincola sp. 176GS2-150 [SHLY]
769101
769177
+
Arg
ACG
[ENA]
¡û
>W2011615230
SJXE01000001
Gammaproteobacteria
Corallincola sp. DASS28 [SJXE]
805452
805528
+
Arg
ACG
[ENA]
¡û
>W2011615231
SJXE01000001
Gammaproteobacteria
Corallincola sp. DASS28 [SJXE]
805584
805660
+
Arg
ACG
[ENA]
¡û
>W2011617176
SKFB01000001
Gammaproteobacteria
Lysobacter sp. N42 [SKFB]
235077
235153
+
Arg
ACG
[ENA]
¡û
>W2011617177
SKFB01000001
Gammaproteobacteria
Lysobacter sp. N42 [SKFB]
235180
235256
+
Arg
ACG
[ENA]
¡û
>W2011648292
SNWT01000005
Gammaproteobacteria
Idiomarina sp. 017G [SNWT]
14677
14601
-
Arg
ACG
[ENA]
¡û
>W2011649483
SNXN01000007
Gammaproteobacteria
Idiomarina loihiensis E2 [SNXN]
86809
86885
+
Arg
ACG
[ENA]
¡û
>W2011652734
SNZY01000007
Gammaproteobacteria
Idiomarina sp. H2 [SNZY]
105816
105740
-
Arg
ACG
[ENA]
¡û
>W2012353418
WJRO01000005
Gammaproteobacteria
Idiomarina loihiensis SN11 [WJRO]
82774
82850
+
Arg
ACG
[ENA]
¡û
>W2110429023
JAEMOO010000012
Gammaproteobacteria
Idiomarina abyssalis KJE-1 [JAEMOO]
11032
10956
-
Arg
ACG
[ENA]
¡û
>W2110429071
JAEMOP010000002
Gammaproteobacteria
Idiomarina abyssalis KJE-2 [JAEMOP]
1231995
1231919
-
Arg
ACG
[ENA]
¡û
>W2110429222
JAEMOS010000029
Gammaproteobacteria
Idiomarina abyssalis KJE-3 [JAEMOS]
22174
22250
+
Arg
ACG
[ENA]
¡û
>W2110577338
JAGWDM010000001
Gammaproteobacteria
Idiomarina abyssalis CG1230 [JAGWDM]
152449
152525
+
Arg
ACG
[ENA]
¡û
>W2110652995
JAHVIQ010000003
Gammaproteobacteria
Pseudidiomarina sediminum SN27-8 [JAHVIQ]
112913
112989
+
Arg
ACG
[ENA]
¡û
>W2110652996
JAHVIQ010000003
Gammaproteobacteria
Pseudidiomarina sediminum SN27-8 [JAHVIQ]
113013
113089
+
Arg
ACG
[ENA]
¡û
>C211388158
CP081832
Gammaproteobacteria
Idiomarina abyssalis MSP-CT [CP081832]
1700259
1700183
-
Arg
ACG
-
¡û
>C231135833
CP074073
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074073]
575752
575828
+
Arg
ACG
-
¡û
>WENV056138
AACY023249163
Marine microbial communities from Global Ocean Sampling (GOS)
967
1045
+
Arg
ACG
[ENA]
>C161107787
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
1690810
1690886
+
Arg
ACG
-
¡û
>C161107788
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
1690933
1691009
+
Arg
ACG
-
¡û
>C131016291
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1869396
1869320
-
Arg
ACG
[Ensembl]
¡û
>W1610616471
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
950352
950276
-
Arg
ACG
[ENA]
¡û
>W1610629341
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
217380
217456
+
Arg
ACG
[ENA]
¡û
>W1610629342
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
217503
217579
+
Arg
ACG
[ENA]
¡û
>W1610906045
LSBQ01000006
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
118397
118473
+
Arg
ACG
[ENA]
¡û
>W1610906046
LSBQ01000006
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
118503
118579
+
Arg
ACG
[ENA]
¡û
>W1710577937
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
951158
951082
-
Arg
ACG
[ENA]
¡û
>W1710594306
FSRE01000002
Gammaproteobacteria
Sulfurivirga caldicuralii [FSRE]
106408
106484
+
Arg
ACG
[ENA]
¡û
>W1710609257
FXWH01000001
Gammaproteobacteria
Pseudidiomarina planktonica [FXWH]
1715279
1715203
-
Arg
ACG
[ENA]
¡û
>W1710609258
FXWH01000001
Gammaproteobacteria
Pseudidiomarina planktonica [FXWH]
1715164
1715088
-
Arg
ACG
[ENA]
¡û
>W1710741606
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
950352
950276
-
Arg
ACG
[ENA]
¡û
>W1710760480
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
217380
217456
+
Arg
ACG
[ENA]
¡û
>W1710760481
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
217503
217579
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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