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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160554 (98 seq.)
>W1710797210
LJSW01000002
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
96348
96424
+
Pro
GGG
[ENA]
¡û
>W1710866210
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1413585
1413661
+
Pro
GGG
[ENA]
¡û
>W1710882984
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
437518
437442
-
Pro
GGG
[ENA]
¡û
>W1711069418
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
274973
274897
-
Pro
GGG
[ENA]
¡û
>W1711501949
MKSE01000019
Alphaproteobacteria
Altererythrobacter sp. 66-12 [MKSE]
362115
362191
+
Pro
GGG
[ENA]
¡û
>C171056117
CP017057
Alphaproteobacteria
Erythrobacter litoralis DSM 8509 [CP017057]
2090430
2090506
+
Pro
GGG
-
¡û
>C171115155
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1366741
1366665
-
Pro
GGG
-
¡û
>W131046824
AMSR01000017
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
23209
23133
-
Pro
GGG
[ENA]
¡û
>W131229857
AUHC01000009
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
137649
137725
+
Pro
GGG
[ENA]
¡û
>C027934
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1947869
1947945
+
Pro
GGG
[Ensembl]
¡û
>WENV180020402
FTCZ01002981
[FTCZ] metagenome; soil
1768
1692
-
Pro
GGG
[ENA]
¡û
>WENV180039550
LLBY010089556
[LLBY] soil metagenome; soil from tomato rhizosphere
264
188
-
Pro
GGG
[ENA]
¡û
>WENV180292900
OBIV01701206
[OBIV] soil metagenome; Clay
60
136
+
Pro
GGG
[ENA]
¡û
>WENV180310850
OBJT01036312
[OBJT] soil metagenome; soil
714
638
-
Pro
GGG
[ENA]
¡û
>WENV181164213
OEIR01060826
[OEIR] soil metagenome; soil
170
94
-
Pro
GGG
[ENA]
¡û
>WENV181221864
OFCZ01000410
[OFCZ] metagenome; soil
330
254
-
Pro
GGG
[ENA]
¡û
>WENV181233641
OFET01000022
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
203471
203395
-
Pro
GGG
[ENA]
¡û
>WENV181234321
OFEU01000037
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
19196
19272
+
Pro
GGG
[ENA]
¡û
>WENV183729086
PJTQ01004171
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2081
2157
+
Pro
GGG
[ENA]
¡û
>WENV183741221
PJUF01060319
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
108
32
-
Pro
GGG
[ENA]
¡û
>WENV183741255
PJUF01068748
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
15
91
+
Pro
GGG
[ENA]
¡û
>WENV183741315
PJUF01084056
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
361
285
-
Pro
GGG
[ENA]
¡û
>WENV170372863
CETS01141777
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
886
810
-
Pro
GGG
[ENA]
¡û
>C181088870
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1963624
1963700
+
Pro
GGG
-
¡û
>C181088921
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1956208
1956284
+
Pro
GGG
-
¡û
>C181089248
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1950209
1950285
+
Pro
GGG
-
¡û
>C191002574
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
2965813
2965889
+
Pro
GGG
-
¡û
>C191145595
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1947815
1947891
+
Pro
GGG
-
¡û
>C191145646
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1947815
1947891
+
Pro
GGG
-
¡û
>C191145697
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1947815
1947891
+
Pro
GGG
-
¡û
>W141564488
JIAU01000008
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
80045
80121
+
Pro
GGG
[ENA]
¡û
>W09133985
ACQU01000013
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
15918
15842
-
Pro
GGG
[ENA]
¡û
>W141700174
JMIX01000003
Alphaproteobacteria
Erythrobacter litoralis [JMIX]
136554
136478
-
Pro
GGG
[ENA]
¡û
>W141779096
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
1419564
1419640
+
Pro
GGG
[ENA]
¡û
>W1910182427
BJMW01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
30357
30433
+
Pro
GGG
[ENA]
¡û
>W1910182460
BJMX01000003
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
145039
144963
-
Pro
GGG
[ENA]
¡û
>C141008812
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1452562
1452486
-
Pro
GGG
[Ensembl]
¡û
>W1911765796
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
389154
389078
-
Pro
GGG
[ENA]
¡û
>W1911783356
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
900974
901050
+
Pro
GGG
[ENA]
¡û
>W1810538543
QDFY01000005
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
156935
156859
-
Pro
GGG
[ENA]
¡û
>W1810586276
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
1210501
1210425
-
Pro
GGG
[ENA]
¡û
>C151004614
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1451649
1451573
-
Pro
GGG
[Ensembl]
¡û
>C151004665
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
1452348
1452272
-
Pro
GGG
[Ensembl]
¡û
>C151082901
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
920150
920226
+
Pro
GGG
-
¡û
>C151086740
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
716121
716045
-
Pro
GGG
[Ensembl]
¡û
>W2010096042
BJMW01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
30357
30433
+
Pro
GGG
[ENA]
¡û
>W2010096075
BJMX01000003
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
145039
144963
-
Pro
GGG
[ENA]
¡û
>W2010641899
JABWGV010000001
Alphaproteobacteria
Altererythrobacter sp. HHU K3-1 [JABWGV]
985399
985475
+
Pro
GGG
[ENA]
¡û
>W2010682026
JACEIA010000001
Alphaproteobacteria
Sphingomonas sp. CGMCC 1.13658 [JACEIA]
67075
66999
-
Pro
GGG
[ENA]
¡û
>W2010731768
JACIJI010000001
Alphaproteobacteria
Stakelama sediminis DSM 27203 [JACIJI]
370995
371071
+
Pro
GGG
[ENA]
¡û
>W2010731943
JACIJL010000005
Alphaproteobacteria
Altererythrobacter atlanticus DSM 100738 [JACIJL]
232452
232376
-
Pro
GGG
[ENA]
¡û
>W2011324239
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
389154
389078
-
Pro
GGG
[ENA]
¡û
>W2011333042
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
900974
901050
+
Pro
GGG
[ENA]
¡û
>W2011353765
RAPF01000004
Alphaproteobacteria
Altererythrobacter sp. HN-Y73 [RAPF]
276154
276078
-
Pro
GGG
[ENA]
¡û
>W2011530299
SBFF01000013
Alphaproteobacteria
Sphingosinicella sp. CPCC 101087 [SBFF]
63341
63265
-
Pro
GGG
[ENA]
¡û
>W2011549846
SDPV01000001
Alphaproteobacteria
Altererythrobacter sp. AY-3R [SDPV]
1626088
1626164
+
Pro
GGG
[ENA]
¡û
>W2011647528
SNWD01000007
Alphaproteobacteria
Stakelama pacifica DSM 25059 [SNWD]
119182
119106
-
Pro
GGG
[ENA]
¡û
>W2011667285
SPDV01000012
Alphaproteobacteria
Sphingomonas sp. 17J27-24 [SPDV]
34902
34826
-
Pro
GGG
[ENA]
¡û
>W2012019560
VFNW01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-23394 [VFNW]
40368
40444
+
Pro
GGG
[ENA]
¡û
>W2012019976
VFOD01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4492 [VFOD]
1032670
1032594
-
Pro
GGG
[ENA]
¡û
>W2012020062
VFOF01000001
Alphaproteobacteria
Zymomonas mobilis AN0101 [VFOF]
40832
40908
+
Pro
GGG
[ENA]
¡û
>W2012020126
VFOG01000001
Alphaproteobacteria
Zymomonas mobilis DSM 14017 [VFOG]
1140145
1140221
+
Pro
GGG
[ENA]
¡û
>W2012020169
VFOH01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12495 [VFOH]
672917
672993
+
Pro
GGG
[ENA]
¡û
>W2012020212
VFOI01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12494 [VFOI]
31129
31205
+
Pro
GGG
[ENA]
¡û
>W2012046568
VIVF01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12497 [VIVF]
1778605
1778681
+
Pro
GGG
[ENA]
¡û
>W2012046630
VIVG01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4286 [VIVG]
1413517
1413441
-
Pro
GGG
[ENA]
¡û
>W2012047454
VIVT01000007
Alphaproteobacteria
Zymomonas mobilis NRRL B-14022 [VIVT]
24444
24520
+
Pro
GGG
[ENA]
¡û
>W2012106748
VOQQ01000001
Alphaproteobacteria
Sphingosinicella ginsenosidimutans BS-11 [VOQQ]
786481
786405
-
Pro
GGG
[ENA]
¡û
>W2012425075
WQMS01000006
Alphaproteobacteria
Sphingomonas sp. MAH-20 [WQMS]
67075
66999
-
Pro
GGG
[ENA]
¡û
>W2012439212
WTYO01000002
Alphaproteobacteria
Altererythrobacter marinus H32 [WTYO]
88111
88035
-
Pro
GGG
[ENA]
¡û
>W2012439377
WTYR01000001
Alphaproteobacteria
Altererythrobacter halimionae LMG 29519 [WTYR]
581181
581105
-
Pro
GGG
[ENA]
¡û
>W2012439581
WTYW01000001
Alphaproteobacteria
Altererythrobacter aurantiacus MCCC 1A09962 [WTYW]
536886
536810
-
Pro
GGG
[ENA]
¡û
>W2110030797
BMLU01000007
Alphaproteobacteria
Stakelama pacifica CGMCC 1.7294 [BMLU]
119202
119126
-
Pro
GGG
[ENA]
¡û
>W2110284330
JACXLC010000001
Alphaproteobacteria
Erythrobacter sp. KMU-140 [JACXLC]
1654603
1654679
+
Pro
GGG
[ENA]
¡û
>W2110567542
JAGRQC010000004
Alphaproteobacteria
Sphingomonadaceae bacterium LXI357 [JAGRQC]
433544
433468
-
Pro
GGG
[ENA]
¡û
>W2110570409
JAGSPB010000001
Alphaproteobacteria
Erythrobacter sp. WH131 [JAGSPB]
46642
46718
+
Pro
GGG
[ENA]
¡û
>W2110600255
JAHFVK010000001
Alphaproteobacteria
Croceibacterium sp. LX-88 [JAHFVK]
1501993
1502069
+
Pro
GGG
[ENA]
¡û
>W2110659184
JAHWZX010000007
Alphaproteobacteria
Stakelama sp. CBK3Z-3 [JAHWZX]
53679
53755
+
Pro
GGG
[ENA]
¡û
>W2110689670
JAINVU010000006
Alphaproteobacteria
Hephaestia sp. CMS5P-6 [JAINVU]
57516
57592
+
Pro
GGG
[ENA]
¡û
>C211062829
CP045200
Alphaproteobacteria
Erythrobacter sp. 3-20A1M [CP045200]
2378787
2378711
-
Pro
GGG
-
¡û
>C211136859
CP060697
Alphaproteobacteria
Sphingomonas sp. sand1-3 [CP060697]
1195137
1195061
-
Pro
GGG
-
¡û
>C211321772
CP073577
Alphaproteobacteria
Erythrobacter sp. JK5 [CP073577]
1535237
1535313
+
Pro
GGG
-
¡û
>C211367569
CP079220
Alphaproteobacteria
Zymomonas mobilis ZM401 [CP079220]
47313
47237
-
Pro
GGG
-
¡û
>C211405861
CP083898
Alphaproteobacteria
Zymomonas mobilis ZM481 [CP083898]
43910
43986
+
Pro
GGG
-
¡û
>C231401971
CP098453
Alphaproteobacteria
Pelagerythrobacter marinus E6 [CP098453]
1296726
1296802
+
Pro
GGG
-
¡û
>C241133226
CP049109
Alphaproteobacteria
Sphingosinithalassobacter tenebrarum zrk23 [CP049109]
1138078
1138002
-
Pro
GGG
-
¡û
>C241138265
CP049869
Alphaproteobacteria
Sphingomonas piscis HDW15B [CP049869]
1101672
1101596
-
Pro
GGG
-
¡û
>C241142374
CP050265
Alphaproteobacteria
Erythrobacter sp. [CP050265]
1589310
1589386
+
Pro
GGG
-
¡û
>C241148322
CP051131
Alphaproteobacteria
Parasphingopyxis algicola JCM 31719 [CP051131]
1820420
1820496
+
Pro
GGG
-
¡û
>W2310025399
BSOO01000007
Alphaproteobacteria
Sphingomonas astaxanthinifaciens NBRC 102146 [BSOO]
65984
66060
+
Pro
GGG
[ENA]
¡û
>C10114598
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
1454596
1454520
-
Pro
GGG
[Ensembl]
¡û
>C11124238
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1433792
1433716
-
Pro
GGG
[Ensembl]
¡û
>C121003158
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1467515
1467439
-
Pro
GGG
[Ensembl]
¡û
>C121015272
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1428902
1428826
-
Pro
GGG
[Ensembl]
¡û
>W1610661167
LJSW01000002
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
96348
96424
+
Pro
GGG
[ENA]
¡û
>W1610728556
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1413585
1413661
+
Pro
GGG
[ENA]
¡û
>W1610744910
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
437518
437442
-
Pro
GGG
[ENA]
¡û
>W1610909946
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
274973
274897
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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