This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160597 (50 seq.)
>W1710863655
LMFH01000006
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
220689
220765
+
Arg
TCT
[ENA]
¡û
>W1710864837
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
54241
54317
+
Arg
TCT
[ENA]
¡û
>W1710865477
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
379523
379599
+
Arg
TCT
[ENA]
¡û
>W1710866122
LMHF01000014
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
285056
285132
+
Arg
TCT
[ENA]
¡û
>W1710867615
LMIK01000008
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
199762
199686
-
Arg
TCT
[ENA]
¡û
>W1710868596
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
380282
380358
+
Arg
TCT
[ENA]
¡û
>W1710868970
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
199757
199681
-
Arg
TCT
[ENA]
¡û
>W1710869023
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
299786
299710
-
Arg
TCT
[ENA]
¡û
>WENV180021971
FTFH01000421
[FTFH] metagenome; soil
242
166
-
Arg
TCT
[ENA]
¡û
>WENV180292318
OBIV01395445
[OBIV] soil metagenome; Clay
295
219
-
Arg
TCT
[ENA]
¡û
>WENV180692073
OCZS010335369
[OCZS] soil metagenome; soil
396
320
-
Arg
TCT
[ENA]
¡û
>W141713911
JMTZ01000040
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
29978
30054
+
Arg
TCT
[ENA]
¡û
>W1911770871
QXJI01000001
Gammaproteobacteria
Lysobacter sp. C8-1 [QXJI]
239687
239763
+
Arg
TCT
[ENA]
¡û
>W1810858438
QTJR01000008
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
92545
92621
+
Arg
TCT
[ENA]
¡û
>W1810860352
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
333882
333958
+
Arg
TCT
[ENA]
¡û
>W1810914481
QVPD01000009
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
53157
53233
+
Arg
TCT
[ENA]
¡û
>W2011328171
QXJI01000001
Gammaproteobacteria
Lysobacter sp. C8-1 [QXJI]
239687
239763
+
Arg
TCT
[ENA]
¡û
>W2011541007
SCOX01000011
Gammaproteobacteria
Xanthomonadaceae bacterium P [SCOX]
85361
85437
+
Arg
TCT
[ENA]
¡û
>W2012084359
VLNU01000001
Gammaproteobacteria
Lysobacter panacisoli JCM 19212 [VLNU]
100665
100589
-
Arg
TCT
[ENA]
¡û
>W2012084406
VLNV01000013
Gammaproteobacteria
Lysobacter sp. SYSU H10001 [VLNV]
36409
36485
+
Arg
TCT
[ENA]
¡û
>W2110336671
JADLZT010000003
Gammaproteobacteria
Lysobacter niastensis DSM 18481 [JADLZT]
247412
247336
-
Arg
TCT
[ENA]
¡û
>W2110394231
JADWPE010000003
Gammaproteobacteria
Lysobacter sp. Cm-3-T8 [JADWPE]
836973
836897
-
Arg
TCT
[ENA]
¡û
>W2110445462
JAERQY020000002
Gammaproteobacteria
Lysobacter sp. MMG2 [JAERQY]
237523
237447
-
Arg
TCT
[ENA]
¡û
>W2110546161
JAGGRH010000053
Gammaproteobacteria
Lysobacter sp. ISL-42 [JAGGRH]
57270
57194
-
Arg
TCT
[ENA]
¡û
>W2110546197
JAGGRI010000029
Gammaproteobacteria
Lysobacter sp. ISL-50 [JAGGRI]
57265
57189
-
Arg
TCT
[ENA]
¡û
>W2110546241
JAGGRJ010000034
Gammaproteobacteria
Lysobacter sp. ISL-52 [JAGGRJ]
24864
24940
+
Arg
TCT
[ENA]
¡û
>W2110546264
JAGGRK010000006
Gammaproteobacteria
Lysobacter sp. ISL-54 [JAGGRK]
57101
57025
-
Arg
TCT
[ENA]
¡û
>W2110662250
JAHXYK010000002
Gammaproteobacteria
Lysobacter sp. ESA13C [JAHXYK]
62330
62406
+
Arg
TCT
[ENA]
¡û
>C211139556
CP060820
Gammaproteobacteria
Lysobacter solisilvae (ex Woo and Kim 2020) II4 [CP060820]
440621
440545
-
Arg
TCT
-
¡û
>C211292408
CP071517
Gammaproteobacteria
Lysobacter arenosi R7 [CP071517]
340355
340431
+
Arg
TCT
-
¡û
>C211292476
CP071518
Gammaproteobacteria
Lysobacter solisilvae R19 [CP071518]
3770191
3770115
-
Arg
TCT
-
¡û
>W2110717443
JAJAVH010000011
Gammaproteobacteria
Luteimonas panaciterrae Gsoil 068 [JAJAVH]
238653
238577
-
Arg
TCT
[ENA]
¡û
>C231266481
CP089924
Gammaproteobacteria
Lysobacter sp. 5GHs7-4 [CP089924]
1898836
1898912
+
Arg
TCT
-
¡û
>C231294128
CP091317
Gammaproteobacteria
Lysobacter soli RCu6 [CP091317]
2011952
2012028
+
Arg
TCT
-
¡û
>C231332336
CP093341
Gammaproteobacteria
Lysobacter sp. S4-A87 [CP093341]
1200989
1200913
-
Arg
TCT
-
¡û
>C231335024
CP093547
Gammaproteobacteria
Lysobacter gummosus 10.1.1 [CP093547]
3739914
3739838
-
Arg
TCT
-
¡û
>C241111584
CP046603
Gammaproteobacteria
Lysobacter soli XL170 [CP046603]
2814320
2814244
-
Arg
TCT
-
¡û
>C161031543
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
2100613
2100689
+
Arg
TCT
[Ensembl]
¡û
>C161031658
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
3739913
3739837
-
Arg
TCT
[Ensembl]
¡û
>C161052103
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
3452768
3452692
-
Arg
TCT
-
¡û
>WENV061641
AACY023436029
Marine microbial communities from Global Ocean Sampling (GOS)
564
486
-
Arg
TCT
[ENA]
>W1610726001
LMFH01000006
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
220689
220765
+
Arg
TCT
[ENA]
¡û
>W1610727183
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
54241
54317
+
Arg
TCT
[ENA]
¡û
>W1610727823
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
379523
379599
+
Arg
TCT
[ENA]
¡û
>W1610728468
LMHF01000014
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
285056
285132
+
Arg
TCT
[ENA]
¡û
>W1610729961
LMIK01000008
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
199762
199686
-
Arg
TCT
[ENA]
¡û
>W1610730942
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
380282
380358
+
Arg
TCT
[ENA]
¡û
>W1610731316
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
199757
199681
-
Arg
TCT
[ENA]
¡û
>W1610731369
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
299786
299710
-
Arg
TCT
[ENA]
¡û
>W1710567397
FOSS01000002
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
629811
629735
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK