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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160600 (27 seq.)
>WENV170705608
LNAP01000013
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
125460
125535
+
Arg
TCT
[ENA]
¡û
>C191125228
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
5136238
5136314
+
Arg
TCT
-
¡û
>W1910832019
MYFO01000042
Bacillota
Paenibacillus sp. MEC069 [MYFO]
25154
25228
+
Arg
TCT
[ENA]
¡û
>W1911771068
QXJM01000029
Bacillota
Cohnella sp. K2E09-144 [QXJM]
41168
41244
+
Arg
TCT
[ENA]
¡û
>W1911779719
QXQB01000001
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
1187409
1187485
+
Arg
TCT
[ENA]
¡û
>W1810697168
QLUW01000001
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
1166163
1166087
-
Arg
TCT
[ENA]
¡û
>W1810860952
QTTN01000034
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
66551
66627
+
Arg
TCT
[ENA]
¡û
>W2010273530
CABKUT020000006
Bacillota
Gorillibacterium timonense [CABKUT]
792695
792619
-
Arg
TCT
[ENA]
¡û
>W2010437627
JAAAMU010000001
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAAAMU]
580893
580817
-
Arg
TCT
[ENA]
¡û
>W2010437738
JAAAMV010000017
Bacillota
Paenibacillus sp. T1 [JAAAMV]
124407
124331
-
Arg
TCT
[ENA]
¡û
>W2010922139
MYFO01000042
Bacillota
Paenibacillus sp. MEC069 [MYFO]
25154
25228
+
Arg
TCT
[ENA]
¡û
>W2011328368
QXJM01000029
Bacillota
Cohnella sp. K2E09-144 [QXJM]
41168
41244
+
Arg
TCT
[ENA]
¡û
>W2011625703
SLZD01000003
Bacillota
Paenibacillus sp. BK736 [SLZD]
370101
370025
-
Arg
TCT
[ENA]
¡û
>W2110460153
JAFBDP010000001
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAFBDP]
824489
824565
+
Arg
TCT
[ENA]
¡û
>W2110537251
JAGGDJ010000010
Bacillota
Paenibacillus sp. MWE-103 [JAGGDJ]
17011
16935
-
Arg
TCT
[ENA]
¡û
>W2110560793
JAGKSP010000001
Bacillota
Paenibacillus sp. DLE-14 [JAGKSP]
409209
409285
+
Arg
TCT
[ENA]
¡û
>C201212502
CP048209
Bacillota
Paenibacillus sp. 12200R-189 [CP048209]
4611993
4612069
+
Arg
TCT
-
¡û
>C201213229
CP048286
Bacillota
Paenibacillus sp. 14171R-81 [CP048286]
6123803
6123727
-
Arg
TCT
-
¡û
>C211375230
CP080269
Bacillota
R14(2021) [CP080269]
2076261
2076337
+
Arg
TCT
-
¡û
>C241293368
CP130318
Bacillota
Paenibacillus aurantius MBLB1776 [CP130318]
1621872
1621796
-
Arg
TCT
-
¡û
>C241306450
CP133017
Bacillota
Paenibacillus silvisoli TW38 [CP133017]
4333375
4333451
+
Arg
TCT
-
¡û
>W1610095303
CYUM01000008
Bacillota
Gorillibacterium timonense SN4 [CYUM]
449450
449374
-
Arg
TCT
[ENA]
¡û
>W1710098098
CYUM01000008
Bacillota
Gorillibacterium timonense SN4 [CYUM]
449450
449374
-
Arg
TCT
[ENA]
¡û
>W1710529253
FNNV01000013
Bacillota
Paenibacillus sp. CF384 [FNNV]
121933
121857
-
Arg
TCT
[ENA]
¡û
>W1710546655
FOCJ01000001
Bacillota
Paenibacillus sp. OV219 [FOCJ]
529643
529567
-
Arg
TCT
[ENA]
¡û
>W1710565371
FORE01000009
Bacillota
Paenibacillus sp. UNC496MF [FORE]
109554
109630
+
Arg
TCT
[ENA]
¡û
>W1710576614
FPAD01000001
Bacillota
Paenibacillus sp. BC26 [FPAD]
1205138
1205062
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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