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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160643 (47 seq.)
>W1711697379
MSKI01000056
Actinomycetota
Actinomyces oris [MSKI]
10683
10609
-
Pro
TGG
[ENA]
¡û
>W1711697420
MSKJ01000006
Actinomycetota
Actinomyces oris [MSKJ]
12308
12382
+
Pro
TGG
[ENA]
¡û
>W1711697937
MSKT01000035
Actinomycetota
Actinomyces oris [MSKT]
12350
12424
+
Pro
TGG
[ENA]
¡û
>W1711697967
MSKU01000036
Actinomycetota
Actinomyces oris [MSKU]
14031
14105
+
Pro
TGG
[ENA]
¡û
>WENV180698144
ODDE01045363
[ODDE] human metagenome; G_DNA_Supragingival plaque
76
2
-
Pro
TGG
[ENA]
¡û
>WENV180717755
ODGE01001497
[ODGE] human metagenome; G_DNA_Buccal mucosa
535
609
+
Pro
TGG
[ENA]
¡û
>WENV180734450
ODGZ01008813
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2316
2242
-
Pro
TGG
[ENA]
¡û
>WENV180735061
ODGZ01056599
[ODGZ] human metagenome; G_DNA_Supragingival plaque
544
469
-
Pro
TGG
[ENA]
¡û
>WENV180755042
ODHU01008968
[ODHU] human metagenome; G_DNA_Supragingival plaque
1535
1609
+
Pro
TGG
[ENA]
¡û
>WENV180801156
ODJD01010258
[ODJD] human metagenome; G_DNA_Supragingival plaque
103
178
+
Pro
TGG
[ENA]
¡û
>WENV180834552
ODKD01050293
[ODKD] human metagenome; G_DNA_Supragingival plaque
353
427
+
Pro
TGG
[ENA]
¡û
>WENV180843351
ODKN01002158
[ODKN] human metagenome; G_DNA_Supragingival plaque
6856
6782
-
Pro
TGG
[ENA]
¡û
>WENV180891662
ODMQ01004227
[ODMQ] human metagenome; G_DNA_Supragingival plaque
2018
2092
+
Pro
TGG
[ENA]
¡û
>WENV180923022
ODTJ01030911
[ODTJ] human metagenome; G_DNA_Supragingival plaque
76
2
-
Pro
TGG
[ENA]
¡û
>WENV180946448
ODUD01092465
[ODUD] human metagenome; G_DNA_Tongue dorsum
190
116
-
Pro
TGG
[ENA]
¡û
>WENV180974040
ODUW01047176
[ODUW] human metagenome; G_DNA_Supragingival plaque
9
83
+
Pro
TGG
[ENA]
¡û
>WENV181019189
ODWU01001041
[ODWU] human metagenome; G_DNA_Supragingival plaque
12396
12470
+
Pro
TGG
[ENA]
¡û
>WENV181050277
ODYD01011397
[ODYD] human metagenome; G_DNA_Supragingival plaque
1461
1387
-
Pro
TGG
[ENA]
¡û
>WENV181065812
ODYV01001793
[ODYV] human metagenome; G_DNA_Buccal mucosa
1188
1262
+
Pro
TGG
[ENA]
¡û
>WENV181070479
OEAE01002093
[OEAE] human metagenome; G_DNA_Supragingival plaque
5397
5471
+
Pro
TGG
[ENA]
¡û
>WENV181081449
OEAS01212724
[OEAS] human metagenome; G_DNA_Supragingival plaque
338
412
+
Pro
TGG
[ENA]
¡û
>WENV181120332
OEFJ01029561
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
83
157
+
Pro
TGG
[ENA]
¡û
>WENV181136340
OEGI01003707
[OEGI] human metagenome; G_DNA_Supragingival plaque
3306
3232
-
Pro
TGG
[ENA]
¡û
>WENV181146788
OEHQ01024666
[OEHQ] human metagenome; G_DNA_Supragingival plaque
726
800
+
Pro
TGG
[ENA]
¡û
>WENV182636494
OJKZ01009886
[OJKZ] metagenome; surface
122
48
-
Pro
TGG
[ENA]
¡û
>WENV183132786
OLOB01007810
[OLOB] human gut metagenome; faeces
2874
2948
+
Pro
TGG
[ENA]
¡û
>WENV183511202
OMIB01000090
[OMIB] human oral metagenome; human oral
2789
2863
+
Pro
TGG
[ENA]
¡û
>C191030335
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
1940333
1940409
+
Pro
TGG
-
¡û
>C191211591
LR134477
Actinomycetota
Actinomyces viscosus NCTC10951 [LR134477]
1437080
1437005
-
Pro
TGG
-
¡û
>W1911798528
QYRR01000003
Actinomycetota
Actinomyces sp. 2119 [QYRR]
193746
193822
+
Pro
TGG
[ENA]
¡û
>W1810191171
PKKK01000001
Actinomycetota
Actinomyces naeslundii UMB0731 [PKKK]
708377
708451
+
Pro
TGG
[ENA]
¡û
>W1810191257
PKKL01000006
Actinomycetota
Actinomyces oris UMB0183 [PKKL]
267570
267496
-
Pro
TGG
[ENA]
¡û
>W1810191419
PKKP01000002
Actinomycetota
Actinomyces naeslundii UMB0181 [PKKP]
278650
278576
-
Pro
TGG
[ENA]
¡û
>W2011195606
PIZB01000037
Actinomycetota
Actinomyces sp. 340 [PIZB]
25126
25202
+
Pro
TGG
[ENA]
¡û
>W2011343496
QYRR01000003
Actinomycetota
Actinomyces sp. 2119 [QYRR]
193746
193822
+
Pro
TGG
[ENA]
¡û
>W2011484387
RQZC01000004
Actinomycetota
Actinomyces bowdenii OH5050 [RQZC]
24936
25010
+
Pro
TGG
[ENA]
¡û
>W2012036882
VICC01000005
Actinomycetota
Actinomyces oris CCUG 34288 [VICC]
219865
219939
+
Pro
TGG
[ENA]
¡û
>W2012206700
VXKM01000002
Actinomycetota
Actinomyces johnsonii CCUG 34287T [VXKM]
189534
189609
+
Pro
TGG
[ENA]
¡û
>W2110074315
CABFLV010000013
Actinomycetota
Actinomyces naeslundii [CABFLV]
213679
213753
+
Pro
TGG
[ENA]
¡û
>W10103553
ACRE01000006
Actinomycetota
Actinomyces viscosus C505 [ACRE]
65039
64965
-
Pro
TGG
[ENA]
¡û
>C211115972
CP058259
Actinomycetota
Actinomyces sp. oral taxon 169 F0496 [CP058259]
2049902
2049828
-
Pro
TGG
-
¡û
>C211221438
CP066060
Actinomycetota
Actinomyces oris FDAARGOS_1051 [CP066060]
667651
667725
+
Pro
TGG
-
¡û
>C211239637
CP068012
Actinomycetota
Actinomyces sp. HMT 175 [CP068012]
2017501
2017427
-
Pro
TGG
-
¡û
>W11103761
ACRE01000006
Actinomycetota
Actinomyces viscosus C505 [ACRE]
65039
64965
-
Pro
TGG
[ENA]
¡û
>W11133263
AECW01000573
Actinomycetota
Actinomyces sp. oral taxon 171 oral taxon 171 str. F0337 [AECW]
2780
2854
+
Pro
TGG
[ENA]
¡û
>W11156698
AFBL01000048
Actinomycetota
Actinomyces sp. oral taxon 170 oral taxon 170 str. F0386 [AFBL]
77294
77368
+
Pro
TGG
[ENA]
¡û
>W11174509
AFUR01000006
Actinomycetota
Actinomyces sp. oral taxon 175 oral taxon 175 str. F0384 [AFUR]
158104
158030
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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