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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160832 (20 seq.)
>W1710893124
LNEL01000008
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077536 [LNEL]
24165
24241
+
Arg
CCG
[ENA]
¡û
>WENV011224
AACY020305987
Marine microbial communities from Global Ocean Sampling (GOS)
4712
4634
-
Arg
CCG
[ENA]
>WENV180292396
OBIV01429041
[OBIV] soil metagenome; Clay
164
240
+
Arg
CCG
[ENA]
¡û
>WENV183702877
PDVJ01000518
[PDVJ] alkali sediment metagenome; glacial lake sediment
10164
10240
+
Arg
CCG
[ENA]
¡û
>WENV183703755
PDVJ01041870
[PDVJ] alkali sediment metagenome; glacial lake sediment
275
199
-
Arg
CCG
[ENA]
¡û
>WENV170453601
CEUZ01499436
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
646
570
-
Arg
CCG
[ENA]
¡û
>WENV170456209
CEVA01183694
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
324
248
-
Arg
CCG
[ENA]
¡û
>WENV170711216
LNFM01004038
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
24161
24237
+
Arg
CCG
[ENA]
¡û
>W1810058524
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
1105447
1105523
+
Arg
CCG
[ENA]
¡û
>SRA1009359
SRR020491.202663
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
156
232
+
Arg
CCG
[SRA]
>W2010473205
JAAIJQ010000058
Gammaproteobacteria
Thiorhodococcus minor DSM 11518 [JAAIJQ]
30665
30741
+
Arg
CCG
[ENA]
¡û
>W2010595721
JABEVQ010000009
Gammaproteobacteria
Marinobacter adhaerens KG14 [JABEVQ]
890
814
-
Arg
CCG
[ENA]
¡û
>W2010703145
JACHHX010000001
Gammaproteobacteria
Rehaibacterium terrae DSM 25897 [JACHHX]
57347
57423
+
Arg
CCG
[ENA]
¡û
>W2012125882
VRTS01000005
Gammaproteobacteria
Lysobacter sp. Alg18-2.2 [VRTS]
26484
26408
-
Arg
CCG
[ENA]
¡û
>C231314466
CP092283
Gammaproteobacteria
Marinobacter sp. M4C [CP092283]
563134
563058
-
Arg
CCG
-
¡û
>C231314481
CP092284
Gammaproteobacteria
Marinobacter sp. M3C [CP092284]
2129130
2129206
+
Arg
CCG
-
¡û
>C231314563
CP092288
Gammaproteobacteria
Marinobacter sp. M2C [CP092288]
563134
563058
-
Arg
CCG
-
¡û
>C231314612
CP092289
Gammaproteobacteria
Marinobacter sp. M1C [CP092289]
561453
561377
-
Arg
CCG
-
¡û
>C131005709
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
475499
475423
-
Arg
CCG
[Ensembl]
¡û
>W1610753390
LNEL01000008
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077536 [LNEL]
24165
24241
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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