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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160921 (56 seq.)
>W1711712513
MTCA01000011
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
32213
32287
+
Arg
TCG
[ENA]
¡û
>W131225424
AUDO01000008
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
216257
216333
+
Arg
TCG
[ENA]
¡û
>W141023466
AJXL01000039
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
270
196
-
Arg
TCG
[ENA]
¡û
>WENV180283976
OBID01008372
[OBID] metagenome; sludge
2801
2875
+
Arg
TCG
[ENA]
¡û
>WENV180585256
OCOK01066212
[OCOK] marine metagenome; ENVO:00002010
65
139
+
Arg
TCG
[ENA]
¡û
>WENV180593953
OCOY01005929
[OCOY] marine metagenome; ENVO:00002010
719
793
+
Arg
TCG
[ENA]
¡û
>WENV181324168
OFLC01002303
[OFLC] marine metagenome; melt pond
1020
946
-
Arg
TCG
[ENA]
¡û
>WENV170559509
CXWL01126392
[CXWL] groundwater metagenome; biofilm material
3316
3240
-
Arg
TCG
[ENA]
¡û
>C181047458
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
225421
225347
-
Arg
TCG
-
¡û
>W141820208
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
1735081
1735155
+
Arg
TCG
[ENA]
¡û
>W1810072167
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
1602853
1602927
+
Arg
TCG
[ENA]
¡û
>W1810156550
PJBJ01000030
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
283228
283154
-
Arg
TCG
[ENA]
¡û
>SRA1004359
SRR006906.9820
metagenomic water samples (SRP000427)
85
159
+
Arg
TCG
[SRA]
>SRA1004948
SRR006906.194189
metagenomic water samples (SRP000427)
90
16
-
Arg
TCG
[SRA]
>W1810365435
PVUB01000003
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
234124
234198
+
Arg
TCG
[ENA]
¡û
>W1810722597
QNUX01000006
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
99610
99684
+
Arg
TCG
[ENA]
¡û
>W1810723010
QNVY01000001
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
1151469
1151543
+
Arg
TCG
[ENA]
¡û
>W1810763366
QQBA01000007
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
29853
29779
-
Arg
TCG
[ENA]
¡û
>W2010528562
JAAOBY010000001
Bacteroidota
Flavobacterium sp. F339 [JAAOBY]
818640
818714
+
Arg
TCG
[ENA]
¡û
>W2010613157
JABSNL010000003
Bacteroidota
Flavobacterium sp. 14A [JABSNL]
275968
275894
-
Arg
TCG
[ENA]
¡û
>W2010613254
JABSNN010000001
Bacteroidota
Flavobacterium sp. 7E [JABSNN]
404402
404476
+
Arg
TCG
[ENA]
¡û
>W2011262676
QKNZ01000024
Bacteroidota
Flavobacterium sp. SOK18b [QKNZ]
9490
9416
-
Arg
TCG
[ENA]
¡û
>W2011375199
RBKZ01000001
Bacteroidota
Flavobacterium sp. 120 [RBKZ]
2837027
2836953
-
Arg
TCG
[ENA]
¡û
>W2011388662
RBXA01000001
Bacteroidota
Flavobacterium limicola DSM 15094 [RBXA]
1076726
1076800
+
Arg
TCG
[ENA]
¡û
>W2011412700
REFH01000007
Bacteroidota
Flavobacterium weaverense DSM 19727 [REFH]
318760
318836
+
Arg
TCG
[ENA]
¡û
>W2011633346
SMFO01000001
Bacteroidota
Flavobacterium sp. TSA-D2 [SMFO]
284368
284294
-
Arg
TCG
[ENA]
¡û
>W2011637042
SMLF01000002
Bacteroidota
Flavobacterium sp. GT3P67 [SMLF]
111326
111400
+
Arg
TCG
[ENA]
¡û
>W2011637075
SMLG01000001
Bacteroidota
Flavobacterium sp. LB3P52 [SMLG]
833060
833134
+
Arg
TCG
[ENA]
¡û
>W2011637130
SMLH01000003
Bacteroidota
Flavobacterium sp. LB2P22 [SMLH]
109877
109951
+
Arg
TCG
[ENA]
¡û
>W2012031784
VHLM01000019
Bacteroidota
Flavobacterium sp. I-STPP5a [VHLM]
102132
102206
+
Arg
TCG
[ENA]
¡û
>W2012031873
VHLN01000104
Bacteroidota
Flavobacterium sp. I-STPA6A [VHLN]
102819
102893
+
Arg
TCG
[ENA]
¡û
>W2012081612
VLKO01000002
Bacteroidota
Flavobacterium tiangeerense CGMCC 1.6847 [VLKO]
48389
48315
-
Arg
TCG
[ENA]
¡û
>W2012082073
VLKX01000007
Bacteroidota
Flavobacterium glaciei CGMCC 1.5380 [VLKX]
134440
134514
+
Arg
TCG
[ENA]
¡û
>W2012102753
VOGZ02000001
Bacteroidota
Flavobacterium sp. XN-5 [VOGZ]
310524
310450
-
Arg
TCG
[ENA]
¡û
>W2110210802
JACFTC010000001
Bacteroidota
Flavobacterium sp. GP15 [JACFTC]
62681
62607
-
Arg
TCG
[ENA]
¡û
>W2110248850
JACRUI010000001
Bacteroidota
Flavobacterium kayseriense F-47 [JACRUI]
1258534
1258610
+
Arg
TCG
[ENA]
¡û
>W2110248905
JACRUJ010000001
Bacteroidota
Flavobacterium kayseriense F-380 [JACRUJ]
198715
198639
-
Arg
TCG
[ENA]
¡û
>W2110248929
JACRUK010000001
Bacteroidota
Flavobacterium muglaense F-60 [JACRUK]
215371
215297
-
Arg
TCG
[ENA]
¡û
>W2110248974
JACRUL010000001
Bacteroidota
Flavobacterium muglaense F-392 [JACRUL]
215371
215297
-
Arg
TCG
[ENA]
¡û
>W2110249025
JACRUM010000001
Bacteroidota
Flavobacterium turcicum F-400 [JACRUM]
818640
818714
+
Arg
TCG
[ENA]
¡û
>W2110363502
JADOVD010000005
Bacteroidota
Flavobacterium sp. CG_9.10 [JADOVD]
111863
111937
+
Arg
TCG
[ENA]
¡û
>W2110532798
JAGFBU010000001
Bacteroidota
Flavobacterium sp. P4023 [JAGFBU]
548563
548489
-
Arg
TCG
[ENA]
¡û
>W2110541225
JAGGNA010000001
Bacteroidota
Flavobacterium sp. CG_23.5 [JAGGNA]
2957824
2957898
+
Arg
TCG
[ENA]
¡û
>W2110563424
JAGPXB010000001
Bacteroidota
Flavobacterium erciyesense F-328 [JAGPXB]
28413
28339
-
Arg
TCG
[ENA]
¡û
>C201225259
CP049329
Bacteroidota
Flavobacterium sp. Sr18 [CP049329]
1464586
1464512
-
Arg
TCG
-
¡û
>C211385991
CP081492
Bacteroidota
Flavobacterium sp. CHNK8 [CP081492]
2859497
2859423
-
Arg
TCG
-
¡û
>C231235147
CP087132
Bacteroidota
Flavobacterium sp. F-29 [CP087132]
1556649
1556723
+
Arg
TCG
-
¡û
>C231235313
CP087135
Bacteroidota
Flavobacterium sp. F-340 [CP087135]
1513393
1513467
+
Arg
TCG
-
¡û
>C231652948
OU957226
Bacteroidota
Flavobacterium sp. CECT 9288 [OU957226, OU957227]
2793920
2793846
-
Arg
TCG
-
¡û
>W1511390913
JSYM01000001
Bacteroidota
Flavobacterium sp. AED [JSYM]
1718318
1718394
+
Arg
TCG
[ENA]
¡û
>W121034200
AHKF01000016
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
54791
54867
+
Arg
TCG
[ENA]
¡û
>W1710528035
FNMV01000009
Bacteroidota
Flavobacterium degerlachei [FNMV]
53375
53299
-
Arg
TCG
[ENA]
¡û
>W1710539670
FNVP01000002
Bacteroidota
Flavobacterium urumqiense [FNVP]
37806
37730
-
Arg
TCG
[ENA]
¡û
>W1710548142
FODN01000001
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
337867
337791
-
Arg
TCG
[ENA]
¡û
>W1710585721
FQWO01000004
Bacteroidota
Flavobacterium granuli [FQWO]
234126
234200
+
Arg
TCG
[ENA]
¡û
>W1710592406
FRCL01000001
Bacteroidota
Flavobacterium xinjiangense [FRCL]
227169
227095
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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