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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161019 (18 seq.)
>W1711404427
MFYK01000017
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
43278
43201
-
Arg
GCG
[ENA]
¡û
>W1711404637
MFYP01000044
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_58_10 [MFYP]
18206
18283
+
Arg
GCG
[ENA]
¡û
>W1711404717
MFYR01000012
Unclassified
Candidatus Peribacteria bacterium RIFOXYD2_FULL_58_15 [MFYR]
83062
82985
-
Arg
GCG
[ENA]
¡û
>W1711582980
MNWP01000002
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
24597
24674
+
Arg
GCG
[ENA]
¡û
>WENV180263221
OBEQ011456849
[OBEQ] groundwater metagenome; groundwater
151
228
+
Arg
GCG
[ENA]
¢þ
>WENV183688426
ORMF011288798
[ORMF] groundwater metagenome; groundwater
2991
3068
+
Arg
GCG
[ENA]
¢þ
>W1910717020
MFXQ01000086
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_9 [MFXQ]
8670
8747
+
Arg
GCG
[ENA]
¡û
>W1910717036
MFXR01000012
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_54_22 [MFXR]
52277
52200
-
Arg
GCG
[ENA]
¡û
>W1910717255
MFXX01000006
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_55_24 [MFXX]
52200
52123
-
Arg
GCG
[ENA]
¡û
>W1910717445
MFYC01000007
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_54_110 [MFYC]
14409
14332
-
Arg
GCG
[ENA]
¡û
>W1910717526
MFYE01000014
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_55_36 [MFYE]
52174
52097
-
Arg
GCG
[ENA]
¡û
>W1910717629
MFYG01000023
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_55_15 [MFYG]
40461
40384
-
Arg
GCG
[ENA]
¡û
>W1910721584
MGES01000010
Unclassified
Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_51_9 [MGES]
18227
18150
-
Arg
GCG
[ENA]
¡û
>C161050429
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
212432
212509
+
Arg
GCG
-
¡û
>C161050473
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
212518
212595
+
Arg
GCG
-
¡û
>C161050517
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
212518
212595
+
Arg
GCG
-
¡û
>C161050561
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
212518
212595
+
Arg
GCG
-
¡û
>C161050605
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
212518
212595
+
Arg
GCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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