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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161055 (73 seq.)
>W131211443
ATMR01000176
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
146808
146884
+
Arg
TCT
[ENA]
¡û
>W131229979
AUHF01000005
Bacteroidota
Christiangramia portivictoriae DSM 23547 [AUHF]
401439
401515
+
Arg
TCT
[ENA]
¡û
>W131230018
AUHG01000012
Bacteroidota
Christiangramia echinicola DSM 19838 [AUHG]
17032
16956
-
Arg
TCT
[ENA]
¡û
>C171059695
CP017259
Bacteroidota
Formosa sp. Hel3_A1_48 [CP017259]
299779
299703
-
Arg
TCT
-
¡û
>C171074068
CP018153
Bacteroidota
Christiangramia salexigens LPB0144 [CP018153]
762953
762877
-
Arg
TCT
-
¡û
>w014019
AAOC01000006
Bacteroidota
Maribacter sp. HTCC2170 HTCC2170 [AAOC]
186462
186384
-
Arg
TCT
[ENA]
¡û
>WENV180399075
OBQE01039178
[OBQE] marine metagenome; ENVO.00002150
142
68
-
Arg
TCT
[ENA]
¡û
>WENV170298761
CESF01253641
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
108
184
+
Arg
TCT
[ENA]
¡û
>WENV170300838
CESG01198214
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
524
448
-
Arg
TCT
[ENA]
¡û
>WENV170309531
CESL01151038
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
131
207
+
Arg
TCT
[ENA]
¡û
>WENV170337502
CETA01123888
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
637
713
+
Arg
TCT
[ENA]
¡û
>WENV170579831
FUFK010041541
[FUFK] metagenome; unknown
7568
7492
-
Arg
TCT
[ENA]
¡û
>WENV170583963
FUFK010178877
[FUFK] metagenome; unknown
356
280
-
Arg
TCT
[ENA]
¡û
>WENV170589208
FUFK010625043
[FUFK] metagenome; unknown
175
99
-
Arg
TCT
[ENA]
¡û
>WENV170781947
MAAC01005043
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4979
4903
-
Arg
TCT
[ENA]
¡û
>WENV170783471
MAAC01017258
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3150
3076
-
Arg
TCT
[ENA]
¡û
>WENV170783551
MAAC01017709
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
11863
11937
+
Arg
TCT
[ENA]
¡û
>WENV170929813
MDTG01156581
[MDTG] marine metagenome; seawater
1472
1396
-
Arg
TCT
[ENA]
¡û
>C191182534
CP040749
Bacteroidota
Aureibaculum algae 10Alg 115 [CP040749]
2862600
2862526
-
Arg
TCT
-
¡û
>W141562369
JHZC01000022
Bacteroidota
Maribacter antarcticus DSM 21422 [JHZC]
17684
17610
-
Arg
TCT
[ENA]
¡û
>W141819215
JQMD01000002
Bacteroidota
Zobellia uliginosa [JQMD]
3220208
3220282
+
Arg
TCT
[ENA]
¡û
>W1910547421
FZNT01000001
Bacteroidota
Lutibacter agarilyticus DSM 29150 [FZNT]
55574
55648
+
Arg
TCT
[ENA]
¡û
>W1910547586
FZNX01000001
Bacteroidota
Lutibacter flavus DSM 27993 [FZNX]
120212
120286
+
Arg
TCT
[ENA]
¡û
>W1810118427
PHQQ01000011
Bacteroidota
Arenibacter catalasegens P308H10 [PHQQ]
112152
112228
+
Arg
TCT
[ENA]
¡û
>W1810144836
PIOB01000002
Bacteroidota
Arenibacter hampyeongensis JCM 17788 [PIOB]
172198
172122
-
Arg
TCT
[ENA]
¡û
>W1810504139
QBKQ01000002
Bacteroidota
Christiangramia gaetbulicola DSM 23082 [QBKQ]
178831
178757
-
Arg
TCT
[ENA]
¡û
>W1810659328
QJJZ01000007
Bacteroidota
Arenibacter sp. ARW7G5Y1 [QJJZ]
249741
249817
+
Arg
TCT
[ENA]
¡û
>W1810672057
QJTD01000002
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
397172
397246
+
Arg
TCT
[ENA]
¡û
>W1810693656
QLLN01000001
Bacteroidota
Arenibacter echinorum DSM 23522 [QLLN]
679260
679334
+
Arg
TCT
[ENA]
¡û
>W1810789324
QRGD01000004
Bacteroidota
Aureibaculum luteum SM1352 [QRGD]
172076
172002
-
Arg
TCT
[ENA]
¡û
>W2010429182
FZNT01000001
Bacteroidota
Lutibacter agarilyticus DSM 29150 [FZNT]
55574
55648
+
Arg
TCT
[ENA]
¡û
>W2010429347
FZNX01000001
Bacteroidota
Lutibacter flavus DSM 27993 [FZNX]
120212
120286
+
Arg
TCT
[ENA]
¡û
>W2010568056
JAATJT010000002
Bacteroidota
Gaetbulibacter sp. S0825 [JAATJT]
754698
754624
-
Arg
TCT
[ENA]
¡û
>W2010597132
JABFDE010000001
Bacteroidota
Winogradskyella sp. Ha767 [JABFDE]
258307
258381
+
Arg
TCT
[ENA]
¡û
>W2010597339
JABFDJ010000009
Bacteroidota
Winogradskyella sp. Z738 [JABFDJ]
22526
22452
-
Arg
TCT
[ENA]
¡û
>W2010746187
JACLCP010000002
Bacteroidota
Winogradskyella flava KCTC 52348 [JACLCP]
481413
481487
+
Arg
TCT
[ENA]
¡û
>W2011401403
RCNR01000066
Bacteroidota
Zobellia amurskyensis KMM 3526 [RCNR]
7216
7290
+
Arg
TCT
[ENA]
¡û
>W2011401445
RCNS01000004
Bacteroidota
Zobellia laminariae KMM 3676 [RCNS]
451057
450983
-
Arg
TCT
[ENA]
¡û
>W2011411395
RDRZ01000001
Bacteroidota
Flavobacteriaceae bacterium PRS1 [RDRZ]
68490
68416
-
Arg
TCT
[ENA]
¡û
>W2011460709
RPFJ01000008
Bacteroidota
Flavobacteriaceae bacterium BH-SD17 [RPFJ]
91893
91967
+
Arg
TCT
[ENA]
¡û
>W2011963026
VATY01000001
Bacteroidota
Maribacter sp. RZ26 [VATY]
2065893
2065967
+
Arg
TCT
[ENA]
¡û
>W2011963559
VAUW01000010
Bacteroidota
Maribacter sp. ACAM166 [VAUW]
133073
133148
+
Arg
TCT
[ENA]
¡û
>W2012017002
VFME01000001
Bacteroidota
Gramella sp. Hel_I_59 [VFME]
1802624
1802550
-
Arg
TCT
[ENA]
¡û
>W2012034862
VHSF01000001
Bacteroidota
Gramella sp. HSMS-1 [VHSF]
120753
120679
-
Arg
TCT
[ENA]
¡û
>W2012063409
VJVW01000003
Bacteroidota
Gramella aestuarii BS12 [VJVW]
441256
441330
+
Arg
TCT
[ENA]
¡û
>W2110046657
BMWQ01000002
Bacteroidota
Winogradskyella epiphytica KCTC 12220 [BMWQ]
440850
440776
-
Arg
TCT
[ENA]
¡û
>W2110181276
JABTCF010000002
Bacteroidota
Maribacter sp. ANRC-HE7 [JABTCF]
396321
396245
-
Arg
TCT
[ENA]
¡û
>W2110198822
JACATN010000001
Bacteroidota
Zobellia sp. KMM 6746 [JACATN]
197495
197569
+
Arg
TCT
[ENA]
¡û
>W2110236887
JACLHY010000005
Bacteroidota
Arenibacter arenosicollis BSSL-BM3 [JACLHY]
63152
63226
+
Arg
TCT
[ENA]
¡û
>W2110309322
JADDXQ010000009
Bacteroidota
Zobellia nedashkovskayae Asnod3-E08-A [JADDXQ]
2479879
2479953
+
Arg
TCT
[ENA]
¡û
>W2110309380
JADDXR010000002
Bacteroidota
Zobellia nedashkovskayae Asnod2-B07-B [JADDXR]
2072083
2072009
-
Arg
TCT
[ENA]
¡û
>W2110309417
JADDXS010000005
Bacteroidota
Zobellia roscoffensis Asnod2-B02-B [JADDXS]
2104099
2104025
-
Arg
TCT
[ENA]
¡û
>W2110309454
JADDXT010000002
Bacteroidota
Zobellia roscoffensis Asnod1-F08 [JADDXT]
2178542
2178468
-
Arg
TCT
[ENA]
¡û
>W2110409028
JAEHFJ010000010
Bacteroidota
Aureibaculum sp. A20 [JAEHFJ]
157957
157883
-
Arg
TCT
[ENA]
¡û
>W2110462937
JAFBGM010000001
Bacteroidota
Aurantibacter crassamenti HG732 [JAFBGM]
1546562
1546636
+
Arg
TCT
[ENA]
¡û
>W2110504084
JAFISL010000022
Bacteroidota
Flavobacteriaceae bacterium AH-315-B10 [JAFISL]
5929
6003
+
Arg
TCT
[ENA]
¡û
>W2110515448
JAFMPT010000006
Bacteroidota
Winogradskyella sp. E313 [JAFMPT]
63674
63748
+
Arg
TCT
[ENA]
¡û
>W2110570496
JAGSPD010000002
Bacteroidota
Winogradskyella sp. WHY3 [JAGSPD]
133011
133085
+
Arg
TCT
[ENA]
¡û
>W2110611763
JAHKPS010000018
Bacteroidota
Winogradskyella psychrotolerans D3R19 [JAHKPS]
320425
320499
+
Arg
TCT
[ENA]
¡û
>W2110611991
JAHKPY010000014
Bacteroidota
Zobellia uliginosa C3R17 [JAHKPY]
983296
983222
-
Arg
TCT
[ENA]
¡û
>C211074862
CP048410
Bacteroidota
Gramella sp. MT6 [CP048410]
2872280
2872206
-
Arg
TCT
-
¡û
>W2110724296
JAJBZG010000001
Bacteroidota
Gramella sp. ASW11-100T [JAJBZG]
681661
681735
+
Arg
TCT
[ENA]
¡û
>C231625532
CP119758
Bacteroidota
Zobellia sp. LLG6346-3.1 [CP119758]
2630213
2630139
-
Arg
TCT
-
¡û
>C241155498
CP053350
Bacteroidota
Winogradskyella forsetii SW133 [CP053350]
1338754
1338828
+
Arg
TCT
-
¡û
>C241296217
CP130738
Bacteroidota
Zobellia laminariae AS94 [CP130738]
1129044
1129118
+
Arg
TCT
-
¡û
>C10106853
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
2240958
2240884
-
Arg
TCT
[Ensembl]
¡û
>W1511433223
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
151931
152005
+
Arg
TCT
[ENA]
¡û
>WENV056245
AACY023251803
Marine microbial communities from Global Ocean Sampling (GOS)
390
468
+
Arg
TCT
[ENA]
>W1710513965
FNAO01000002
Bacteroidota
Pricia antarctica [FNAO]
348823
348747
-
Arg
TCT
[ENA]
¡û
>W1710514699
FNBD01000014
Bacteroidota
Cellulophaga baltica [FNBD]
75191
75265
+
Arg
TCT
[ENA]
¡û
>W1710521988
FNGV01000016
Bacteroidota
Kriegella aquimaris [FNGV]
137050
136976
-
Arg
TCT
[ENA]
¡û
>W1710583587
FQUX01000008
Bacteroidota
Arenibacter palladensis [FQUX]
181615
181539
-
Arg
TCT
[ENA]
¡û
>W1710602715
FUYL01000013
Bacteroidota
Maribacter arcticus [FUYL]
58779
58705
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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