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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161079 (26 seq.)
>W1711256842
LYSY01000002
Alphaproteobacteria
Rhodospirillales bacterium BBD 1991-14 [LYSY]
521817
521741
-
Arg
CCG
[ENA]
¡û
>WENV180309367
OBJS01000143
[OBJS] beach sand metagenome; beach sand
22846
22922
+
Arg
CCG
[ENA]
¡û
>WENV183686184
ORMF010961896
[ORMF] groundwater metagenome; groundwater
16003
15927
-
Arg
CCG
[ENA]
¡û
>WENV170668254
LADL02002153
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
1585
1509
-
Arg
CCG
[ENA]
¡û
>WENV170962529
MRWF01019390
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
145
221
+
Arg
CCG
[ENA]
¡û
>WENV170963116
MRWG01000015
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
176600
176676
+
Arg
CCG
[ENA]
¡û
>WENV170963851
MRWG01000972
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
18829
18905
+
Arg
CCG
[ENA]
¡û
>WENV170964540
MRWG01017309
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1170
1246
+
Arg
CCG
[ENA]
¡û
>W1911139352
NOXU01000032
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
180308
180232
-
Arg
CCG
[ENA]
¡û
>W1810110836
PHIG01000007
Alphaproteobacteria
Minwuia thermotolerans SY3-13 [PHIG]
182053
182129
+
Arg
CCG
[ENA]
¡û
>W1810138084
PIGG01000081
Alphaproteobacteria
Minwuia thermotolerans SY3-15 [PIGG]
1407
1331
-
Arg
CCG
[ENA]
¡û
>W2010536102
JAAQPH010000003
Alphaproteobacteria
Pelagibius litoralis DSM 21314 [JAAQPH]
250889
250965
+
Arg
CCG
[ENA]
¡û
>W2011014852
NOXU01000032
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
180308
180232
-
Arg
CCG
[ENA]
¡û
>W2012034976
VHSH01000008
Alphaproteobacteria
Rhodospirillaceae bacterium R148 [VHSH]
266132
266208
+
Arg
CCG
[ENA]
¡û
>W2110250813
JACSDK010000001
Alphaproteobacteria
Pelagibius sp. NBU2595 [JACSDK]
62731
62807
+
Arg
CCG
[ENA]
¡û
>C211031037
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
579775
579699
-
Arg
CCG
-
¡û
>C211206636
CP065429
Alphaproteobacteria
Sulfitobacter sp. B30-2 [CP065429]
1731446
1731522
+
Arg
CCG
-
¡û
>C231610087
CP118166
Alphaproteobacteria
Hyphococcus flavus MCCC 1K03223 [CP118166]
1752186
1752262
+
Arg
CCG
-
¡û
>C241250169
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
2626898
2626822
-
Arg
CCG
-
¡û
>C241250216
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
2662384
2662308
-
Arg
CCG
-
¡û
>C241250248
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
2710670
2710746
+
Arg
CCG
-
¡û
>C241250305
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
3607978
3607902
-
Arg
CCG
-
¡û
>C161094038
CP016093
Alphaproteobacteria
Rhizobiales bacterium NRL2 [CP016093]
3762822
3762898
+
Arg
CCG
-
¡û
>WENV070644
AACY023817159
Marine microbial communities from Global Ocean Sampling (GOS)
1378
1302
-
Arg
CCG
[ENA]
>W1611019867
LYSY01000002
Alphaproteobacteria
Rhodospirillales bacterium BBD 1991-14 [LYSY]
521817
521741
-
Arg
CCG
[ENA]
¡û
>WENV078294
AAFZ01022171
Fossil microbial community from Whale Fall (Santa Cruz Basin)
354
430
+
Arg
CCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK