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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161086 (52 seq.)
>W1711149010
LVLC01000001
Campylobacterota
Campylobacter concisus [LVLC]
394003
393927
-
Arg
CCT
[ENA]
¡û
>W1711167578
LVWL01000018
Campylobacterota
Campylobacter concisus [LVWL]
410822
410898
+
Arg
CCT
[ENA]
¡û
>W1712000996
NDYR01000006
Campylobacterota
Campylobacter concisus [NDYR]
137367
137443
+
Arg
CCT
[ENA]
¡û
>W1712001061
NDYS01000003
Campylobacterota
Campylobacter concisus [NDYS]
266889
266965
+
Arg
CCT
[ENA]
¡û
>WENV180804622
ODJG01007476
[ODJG] human metagenome; G_DNA_Supragingival plaque
3159
3235
+
Arg
CCT
[ENA]
¡û
>WENV180813593
ODJO01001311
[ODJO] human metagenome; G_DNA_Supragingival plaque
15519
15595
+
Arg
CCT
[ENA]
¡û
>WENV180983104
ODVF01003558
[ODVF] human metagenome; G_DNA_Supragingival plaque
220
144
-
Arg
CCT
[ENA]
¡û
>WENV181049444
ODYD01000218
[ODYD] human metagenome; G_DNA_Supragingival plaque
15547
15623
+
Arg
CCT
[ENA]
¡û
>WENV181070698
OEAE01006123
[OEAE] human metagenome; G_DNA_Supragingival plaque
428
352
-
Arg
CCT
[ENA]
¡û
>WENV181137489
OEGJ01004898
[OEGJ] human metagenome; G_DNA_Supragingival plaque
3726
3802
+
Arg
CCT
[ENA]
¡û
>WENV181152927
OEIA01010657
[OEIA] human metagenome; G_DNA_Supragingival plaque
134
58
-
Arg
CCT
[ENA]
¡û
>WENV181178132
OEJS01064028
[OEJS] human metagenome; G_DNA_Supragingival plaque
254
330
+
Arg
CCT
[ENA]
¡û
>WENV181180143
OEJT01090618
[OEJT] human metagenome; G_DNA_Supragingival plaque
204
280
+
Arg
CCT
[ENA]
¡û
>W1810147768
PIQX01000001
Campylobacterota
Campylobacter concisus P25CDO-S3 [PIQX]
387435
387359
-
Arg
CCT
[ENA]
¡û
>W1810148024
PIRD01000009
Campylobacterota
Campylobacter concisus P11CDO-S1 [PIRD]
36229
36153
-
Arg
CCT
[ENA]
¡û
>W1810148042
PIRE01000002
Campylobacterota
Campylobacter concisus P10CDO-S2 [PIRE]
388151
388075
-
Arg
CCT
[ENA]
¡û
>W1810148244
PIRJ01000007
Campylobacterota
Campylobacter concisus P1CDO2 [PIRJ]
34547
34471
-
Arg
CCT
[ENA]
¡û
>W1810148349
PIRM01000001
Campylobacterota
Campylobacter concisus H28O-S2 [PIRM]
572495
572419
-
Arg
CCT
[ENA]
¡û
>W1810148385
PIRN01000011
Campylobacterota
Campylobacter concisus H28O-S1 [PIRN]
17919
17995
+
Arg
CCT
[ENA]
¡û
>W1810148481
PIRP01000002
Campylobacterota
Campylobacter concisus H26O-S1 [PIRP]
45928
46004
+
Arg
CCT
[ENA]
¡û
>W1810148704
PIRV01000001
Campylobacterota
Campylobacter concisus H15O-S1 [PIRV]
355956
355880
-
Arg
CCT
[ENA]
¡û
>W1810148829
PIRY01000007
Campylobacterota
Campylobacter concisus H11O-S1 [PIRY]
88977
89053
+
Arg
CCT
[ENA]
¡û
>W1810228738
POYP01000212
Campylobacterota
Campylobacter concisus AAUH-3HCo [POYP]
17559
17635
+
Arg
CCT
[ENA]
¡û
>W1810228960
POYV01000062
Campylobacterota
Campylobacter concisus AAUH-19HCf [POYV]
75438
75514
+
Arg
CCT
[ENA]
¡û
>W1810229709
POZP01000033
Campylobacterota
Campylobacter concisus AAUH-51UCf [POZP]
45637
45713
+
Arg
CCT
[ENA]
¡û
>W1810230147
PPAB01000124
Campylobacterota
Campylobacter concisus AAUH-8HCo [PPAB]
19146
19222
+
Arg
CCT
[ENA]
¡û
>W1810230199
PPAD01000015
Campylobacterota
Campylobacter concisus AAUH-12CDo [PPAD]
50285
50209
-
Arg
CCT
[ENA]
¡û
>W1810230258
PPAE01000046
Campylobacterota
Campylobacter concisus AAUH-12CDti4-a [PPAE]
380783
380707
-
Arg
CCT
[ENA]
¡û
>W1810230368
PPAH01000016
Campylobacterota
Campylobacter concisus AAUH-12CDti5-a [PPAH]
49930
49854
-
Arg
CCT
[ENA]
¡û
>W1810230415
PPAI01000015
Campylobacterota
Campylobacter concisus AAUH-12CDtra2-a [PPAI]
374414
374338
-
Arg
CCT
[ENA]
¡û
>W1810230537
PPAL01000020
Campylobacterota
Campylobacter concisus AAUH-12CDdes4 [PPAL]
49815
49739
-
Arg
CCT
[ENA]
¡û
>W1810230596
PPAM01000019
Campylobacterota
Campylobacter concisus AAUH-12CDce [PPAM]
50208
50132
-
Arg
CCT
[ENA]
¡û
>W1810230701
PPAP01000025
Campylobacterota
Campylobacter concisus AAUH-16UCo-a [PPAP]
107898
107974
+
Arg
CCT
[ENA]
¡û
>W1810230766
PPAQ01000039
Campylobacterota
Campylobacter concisus AAUH-12CDsig [PPAQ]
180891
180815
-
Arg
CCT
[ENA]
¡û
>W1810230838
PPAS01000035
Campylobacterota
Campylobacter concisus AAUH-37UCo-a [PPAS]
17836
17912
+
Arg
CCT
[ENA]
¡û
>W1810232200
PPCB01000035
Campylobacterota
Campylobacter concisus AAUH-5CDo [PPCB]
18101
18177
+
Arg
CCT
[ENA]
¡û
>W1810232288
PPCD01000011
Campylobacterota
Campylobacter concisus AAUH-12CDdes3 [PPCD]
19072
19148
+
Arg
CCT
[ENA]
¡û
>W1810232353
PPCE01000009
Campylobacterota
Campylobacter concisus AAUH-12CDti2-a [PPCE]
495919
495995
+
Arg
CCT
[ENA]
¡û
>W2010285212
CABMKX010000062
Campylobacterota
Campylobacter concisus [CABMKX]
75438
75514
+
Arg
CCT
[ENA]
¡û
>W2010285360
CABMLA010000018
Campylobacterota
Campylobacter concisus [CABMLA]
410822
410898
+
Arg
CCT
[ENA]
¡û
>W2010294924
CABPUA010000003
Campylobacterota
Campylobacter concisus [CABPUA]
35899
35823
-
Arg
CCT
[ENA]
¡û
>W2010295029
CABPUD010000001
Campylobacterota
Campylobacter concisus [CABPUD]
170047
170123
+
Arg
CCT
[ENA]
¡û
>W2010295428
CABPUM010000004
Campylobacterota
Campylobacter concisus [CABPUM]
117974
118050
+
Arg
CCT
[ENA]
¡û
>W2010295530
CABPUP010000001
Campylobacterota
Campylobacter concisus [CABPUP]
396402
396326
-
Arg
CCT
[ENA]
¡û
>W2010295584
CABPUQ010000001
Campylobacterota
Campylobacter concisus [CABPUQ]
1096256
1096180
-
Arg
CCT
[ENA]
¡û
>W2010296054
CABPVC010000004
Campylobacterota
Campylobacter concisus [CABPVC]
155539
155615
+
Arg
CCT
[ENA]
¡û
>W2010296125
CABPVD010000003
Campylobacterota
Campylobacter concisus [CABPVD]
194882
194958
+
Arg
CCT
[ENA]
¡û
>W2010296205
CABPVF010000002
Campylobacterota
Campylobacter concisus [CABPVF]
46389
46465
+
Arg
CCT
[ENA]
¡û
>W2010296716
CABPVR010000009
Campylobacterota
Campylobacter concisus [CABPVR]
52329
52253
-
Arg
CCT
[ENA]
¡û
>C211078632
CP049237
Campylobacterota
Campylobacter concisus H1O1 [CP049237]
659060
659136
+
Arg
CCT
-
¡û
>C211079071
CP049274
Campylobacterota
Campylobacter concisus P10CDO-S2 [CP049274]
744124
744200
+
Arg
CCT
-
¡û
>W1710660664
JXUP01000006
Campylobacterota
Campylobacter concisus [JXUP]
244632
244708
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK