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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161115 (22 seq.)
>W1710804023
LJYX01000025
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
58040
58116
+
Arg
CCG
[ENA]
¡û
>W1711690182
MSEI01000003
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
519524
519448
-
Arg
CCG
[ENA]
¡û
>C171071535
CP018024
Gammaproteobacteria
Alteromonas mediterranea CP48 [CP018024]
84101
84177
+
Arg
CCG
-
¡û
>WENV170248884
CEQQ01232007
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1200
1276
+
Arg
CCG
[ENA]
¡û
>WENV170252392
CEQU01004707
[CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
43836
43760
-
Arg
CCG
[ENA]
¡û
>WENV170424465
CEUO01163484
[CEUO] marine metagenome genome assembly TARA_124_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7
83
+
Arg
CCG
[ENA]
¡û
>WENV170663024
JYMV01000808
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
22906
22830
-
Arg
CCG
[ENA]
¡û
>W1910899083
NGFM01000001
Gammaproteobacteria
Alteromonas pelagimontana 5.12 [NGFM]
653763
653687
-
Arg
CCG
[ENA]
¡û
>W1810157087
PJBR01000027
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
30464
30388
-
Arg
CCG
[ENA]
¡û
>W1810357405
PVNP01000133
Gammaproteobacteria
Alteromonas alba 190 [PVNP]
12311
12235
-
Arg
CCG
[ENA]
¡û
>W2010161390
CABDWP010000001
Gammaproteobacteria
Alteromonas macleodii [CABDWP]
81427
81503
+
Arg
CCG
[ENA]
¡û
>W2010161460
CABDWQ010000001
Gammaproteobacteria
Alteromonas macleodii [CABDWQ]
81490
81566
+
Arg
CCG
[ENA]
¡û
>W2010162422
CABDXK010000001
Gammaproteobacteria
Alteromonas macleodii [CABDXK]
81427
81503
+
Arg
CCG
[ENA]
¡û
>W2010162492
CABDXL010000001
Gammaproteobacteria
Alteromonas macleodii [CABDXL]
81427
81503
+
Arg
CCG
[ENA]
¡û
>W2010736421
JACJEP010000022
Gammaproteobacteria
Pseudoalteromonas sp. SG45-1 [JACJEP]
2155
2079
-
Arg
CCG
[ENA]
¡û
>W2010957984
NGFM01000001
Gammaproteobacteria
Alteromonas pelagimontana 5.12 [NGFM]
653763
653687
-
Arg
CCG
[ENA]
¡û
>C231663538
OX335040
Gammaproteobacteria
Alteromonas macleodii cAlt83 [OX335040]
81490
81566
+
Arg
CCG
-
¡û
>C231665194
OX359235
Gammaproteobacteria
Alteromonas macleodii cBGP6 [OX359235]
81427
81503
+
Arg
CCG
-
¡û
>C231665335
OX359239
Gammaproteobacteria
Alteromonas macleodii cBGP14 [OX359239]
81427
81503
+
Arg
CCG
-
¡û
>C231665476
OX359243
Gammaproteobacteria
Alteromonas macleodii cBGP9 [OX359243]
81427
81503
+
Arg
CCG
-
¡û
>C241152418
CP052766
Gammaproteobacteria
Alteromonas pelagimontana 5.12 [CP052766]
2185598
2185674
+
Arg
CCG
-
¡û
>W1610667880
LJYX01000025
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
58040
58116
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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