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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161121 (65 seq.)
>W1710821503
LKTL01000031
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
14563
14487
-
Arg
CCG
[ENA]
¡û
>W1711027086
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12569
12493
-
Arg
CCG
[ENA]
¡û
>W1711273441
LZFV01000004
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
16554
16478
-
Arg
CCG
[ENA]
¡û
>W1711624599
MPHK01000017
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
867
791
-
Arg
CCG
[ENA]
¡û
>C171108596
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
4513227
4513151
-
Arg
CCG
-
¡û
>C021938
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
473790
473866
+
Arg
CCG
[Ensembl]
¡û
>WENV170022183
BCQK01001360
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
781
705
-
Arg
CCG
[ENA]
¡û
>WENV170023616
BCQL01000223
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
5747
5671
-
Arg
CCG
[ENA]
¡û
>C191117178
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
818350
818426
+
Arg
CCG
-
¡û
>C191148700
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
3000360
3000436
+
Arg
CCG
-
¡û
>C191173237
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1707983
1707907
-
Arg
CCG
-
¡û
>C191185826
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
458550
458626
+
Arg
CCG
-
¡û
>W09103084
AAIV01000003
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
247280
247204
-
Arg
CCG
[ENA]
¡û
>W1910676718
MCTV01000010
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
14423
14347
-
Arg
CCG
[ENA]
¡û
>W1910676955
MCTY01000188
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
6169
6245
+
Arg
CCG
[ENA]
¡û
>W1910677502
MCUF01000076
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
14266
14190
-
Arg
CCG
[ENA]
¡û
>W1910679516
MCVG01000131
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14262
14186
-
Arg
CCG
[ENA]
¡û
>W1910679649
MCVI01000015
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
12811
12735
-
Arg
CCG
[ENA]
¡û
>W1911710140
QPQU01000012
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
178043
178119
+
Arg
CCG
[ENA]
¡û
>W1810157786
PJCD01000004
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
34254
34178
-
Arg
CCG
[ENA]
¡û
>W1810157875
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
2713252
2713176
-
Arg
CCG
[ENA]
¡û
>W2010473943
JAAIKQ010000009
Gammaproteobacteria
Shewanella sp. WXL01 [JAAIKQ]
140573
140649
+
Arg
CCG
[ENA]
¡û
>W2010734433
JACJDU010000025
Gammaproteobacteria
Shewanella sp. SR44-4 [JACJDU]
12888
12812
-
Arg
CCG
[ENA]
¡û
>W2010734714
JACJDX010000008
Gammaproteobacteria
Shewanella sp. SR43-8 [JACJDX]
281389
281465
+
Arg
CCG
[ENA]
¡û
>W2010735088
JACJEB010000006
Gammaproteobacteria
Shewanella sp. SR43-4 [JACJEB]
294331
294407
+
Arg
CCG
[ENA]
¡û
>W2010735853
JACJEJ010000478
Gammaproteobacteria
Shewanella sp. SR41-2 [JACJEJ]
1930
2006
+
Arg
CCG
[ENA]
¡û
>W2010736593
JACJER010000098
Gammaproteobacteria
Shewanella sp. SG44-6 [JACJER]
354
278
-
Arg
CCG
[ENA]
¡û
>W2010736888
JACJEU010000030
Gammaproteobacteria
Shewanella sp. SG44-2 [JACJEU]
12683
12607
-
Arg
CCG
[ENA]
¡û
>W2010738285
JACJFI010000508
Gammaproteobacteria
Shewanella sp. SG41-4 [JACJFI]
1488
1564
+
Arg
CCG
[ENA]
¡û
>W2010738346
JACJFJ010000004
Gammaproteobacteria
Shewanella sp. SG41-3 [JACJFJ]
283034
282958
-
Arg
CCG
[ENA]
¡û
>W2010810448
MCTV01000010
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
14423
14347
-
Arg
CCG
[ENA]
¡û
>W2010810686
MCTY01000188
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
6169
6245
+
Arg
CCG
[ENA]
¡û
>W2010811235
MCUF01000076
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
14266
14190
-
Arg
CCG
[ENA]
¡û
>W2010813251
MCVG01000131
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14262
14186
-
Arg
CCG
[ENA]
¡û
>W2010813384
MCVI01000015
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
12811
12735
-
Arg
CCG
[ENA]
¡û
>W2011284618
QPQU01000012
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
178043
178119
+
Arg
CCG
[ENA]
¡û
>W2011451090
RKKB01000005
Gammaproteobacteria
Shewanella sp. R106 [RKKB]
154621
154697
+
Arg
CCG
[ENA]
¡û
>W2011451159
RKKC01000008
Gammaproteobacteria
Shewanella frigidimarina KCCM 41815 [RKKC]
13654
13578
-
Arg
CCG
[ENA]
¡û
>W2011451262
RKKD01000011
Gammaproteobacteria
Shewanella vesiculosa LMG 24424 [RKKD]
175464
175540
+
Arg
CCG
[ENA]
¡û
>W2011451359
RKKE01000007
Gammaproteobacteria
Shewanella arctica Kim et al. 2012 KCTC 23109 [RKKE]
349
273
-
Arg
CCG
[ENA]
¡û
>W2012070543
VKHR01000069
Gammaproteobacteria
Shewanella sp. TC10 [VKHR]
12100
12176
+
Arg
CCG
[ENA]
¡û
>W2012350779
WJHV01000005
Gammaproteobacteria
Shewanella sp. XMDDZSB0408 [WJHV]
170431
170507
+
Arg
CCG
[ENA]
¡û
>W2012430657
WSRZ01000001
Gammaproteobacteria
Shewanella litoralis JCM 32306 [WSRZ]
64015
63939
-
Arg
CCG
[ENA]
¡û
>W2110026369
BMII01000001
Gammaproteobacteria
Shewanella inventionis CGMCC 1.15339 [BMII]
12800
12724
-
Arg
CCG
[ENA]
¡û
>W2110034477
BMOT01000009
Gammaproteobacteria
Shewanella aestuarii JCM 17801 [BMOT]
139774
139850
+
Arg
CCG
[ENA]
¡û
>W2110036628
BMQI01000037
Gammaproteobacteria
Shewanella algicola JCM 31091 [BMQI]
14567
14491
-
Arg
CCG
[ENA]
¡û
>W2110037304
BMQV01000041
Gammaproteobacteria
Shewanella saliphila JCM 32304 [BMQV]
14491
14415
-
Arg
CCG
[ENA]
¡û
>W2110037405
BMQW01000016
Gammaproteobacteria
Shewanella ulleungensis JCM 32305 [BMQW]
12788
12712
-
Arg
CCG
[ENA]
¡û
>W2110037419
BMQX01000001
Gammaproteobacteria
Shewanella litoralis JCM 32306 [BMQX]
12845
12769
-
Arg
CCG
[ENA]
¡û
>W2110069159
BPEV01000004
Gammaproteobacteria
Shewanella sp. KT0246 [BPEV]
14086
14010
-
Arg
CCG
[ENA]
¡û
>W2110143194
JAAIKR010000007
Gammaproteobacteria
Shewanella intestini MCCC 1A01895 [JAAIKR]
170115
170191
+
Arg
CCG
[ENA]
¡û
>W2110180787
JABKAW020000002
Gammaproteobacteria
Shewanella sp. BF02_Schw [JABKAW]
831689
831613
-
Arg
CCG
[ENA]
¡û
>W2110556837
JAGJDZ010000010
Gammaproteobacteria
Shewanella sp. MMG014 [JAGJDZ]
14462
14386
-
Arg
CCG
[ENA]
¡û
>C201211262
CP048031
Gammaproteobacteria
Shewanella sp. Arc9-LZ [CP048031]
479962
480038
+
Arg
CCG
-
¡û
>C211156623
CP062058
Gammaproteobacteria
Shewanella sp. WPAGA9 [CP062058]
3860808
3860732
-
Arg
CCG
-
¡û
>C211399883
CP082926
Gammaproteobacteria
Shewanella inventionis D1489 [CP082926]
4748889
4748813
-
Arg
CCG
-
¡û
>C231047008
CP041216
Gammaproteobacteria
Shewanella glacialimarina TZS-4 [CP041216]
460571
460647
+
Arg
CCG
-
¡û
>C231131345
CP073588
Gammaproteobacteria
Shewanella vesiculosa M7 [CP073588]
3042681
3042605
-
Arg
CCG
-
¡û
>C231287638
CP090974
Gammaproteobacteria
Shewanella sp. OMA3-2 [CP090974]
896590
896666
+
Arg
CCG
-
¡û
>C241061742
CP041783
Gammaproteobacteria
Shewanella donghaensis LT17 [CP041783]
2814158
2814082
-
Arg
CCG
-
¡û
>C241143126
CP050313
Gammaproteobacteria
Shewanella aestuarii PN3F2 [CP050313]
3663182
3663106
-
Arg
CCG
-
¡û
>C241274076
CP126972
Gammaproteobacteria
Shewanella goraebulensis DAU312 [CP126972]
405244
405320
+
Arg
CCG
-
¡û
>W1610685465
LKTL01000031
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
14563
14487
-
Arg
CCG
[ENA]
¡û
>W1610875198
LRDC01000026
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
12569
12493
-
Arg
CCG
[ENA]
¡û
>W1611032790
LZFV01000004
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
16554
16478
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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