This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161186 (31 seq.)
>W141004277
AFXD01000001
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
196398
196471
+
Met
CAT
[ENA]
¡û
>WENV180383242
OBOU01014381
[OBOU] marine metagenome; ENV:00002010
339
414
+
fMet
CAT
[ENA]
¡û
>WENV180383746
OBOV01015712
[OBOV] marine metagenome; ENV:00002010
223
298
+
fMet
CAT
[ENA]
¡û
>WENV180650296
OCSY01004384
[OCSY] marine metagenome; 30 L Plastic container
606
531
-
fMet
CAT
[ENA]
¡û
>W141240113
CAFN01000021
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
2229
2156
-
Met
CAT
[ENA]
¡û
>WENV170418699
CEUM01061488
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
281
205
-
Met
CAT
[ENA]
¡û
>WENV170439873
CEUV01055528
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
32216
32140
-
Met
CAT
[ENA]
¡û
>WENV170470399
CEVF01261577
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
107
183
+
Met
CAT
[ENA]
¡û
>WENV170517847
CEWE01065685
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
32002
32078
+
Met
CAT
[ENA]
¡û
>WENV170903490
MDTD01202932
[MDTD] marine metagenome; seawater
14699
14775
+
Met
CAT
[ENA]
¡û
>CHL1810012752
KJ746598
Viridiplantae
Prasinoderma coloniale (KJ746598)
36931
37006
+
Met
CAT
[ENA]
¡û
>CHL1810013715
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
58258
58183
-
Met
CAT
[ENA]
¡û
>C181169667
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
3811652
3811725
+
Met
CAT
-
¡û
>W09113169
ABYK01000031
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
55856
55929
+
Met
CAT
[ENA]
¡û
>W09134555
ACSK01001120
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
148
75
-
Met
CAT
[ENA]
¡û
>W1910194316
CZDF01000148
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
306495
306422
-
Met
CAT
[ENA]
¡û
>W1810185572
PKGD01000059
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
7734
7807
+
Met
CAT
[ENA]
¡û
>W2010088442
BIMW01000039
Cyanobacteriota
Arthrospira platensis NIES-46 [BIMW]
11267
11340
+
fMet
CAT
[ENA]
¡û
>W2110217289
JACGXW010000079
Cyanobacteriota
Limnospira fusiformis KN [JACGXW]
17849
17922
+
fMet
CAT
[ENA]
¡û
>W2110226390
JACJNZ010000029
Cyanobacteriota
Cyanobacteria bacterium FACHB-502 [JACJNZ]
73181
73105
-
fMet
CAT
[ENA]
¡û
>W2110232812
JACJSX010000122
Cyanobacteriota
Arthrospira platensis FACHB-971 [JACJSX]
1625
1552
-
fMet
CAT
[ENA]
¡û
>W2110233472
JACJTL010000121
Cyanobacteriota
Arthrospira platensis FACHB-439 [JACJTL]
1658
1585
-
fMet
CAT
[ENA]
¡û
>W2110233736
JACJTS010000131
Cyanobacteriota
Arthrospira platensis FACHB-835 [JACJTS]
1631
1558
-
fMet
CAT
[ENA]
¡û
>C201246891
CP051185
Cyanobacteriota
Limnospira fusiformis SAG 85.79 [CP051185]
3785055
3785128
+
fMet
CAT
-
¡û
>C211234250
CP066886
Cyanobacteriota
Arthrospira sp. PCC 9108 [CP066886]
2820865
2820792
-
fMet
CAT
-
¡û
>C231030942
CP019998
Cyanobacteriota
Arthrospira platensis C1 [CP019998]
4434321
4434394
+
fMet
CAT
-
¡û
>W10111346
ADDH01000083
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
92109
92182
+
Met
CAT
[ENA]
¡û
>W11114289
ADDH01000083
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
92109
92182
+
Met
CAT
[ENA]
¡û
>W1511585667
LAYT01000185
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
9032
8959
-
Met
CAT
[ENA]
¡û
>C161049411
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
2743849
2743776
-
Met
CAT
-
¡û
>C161103171
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
1859132
1859059
-
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK