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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161217 (40 seq.)
>C171064267
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2611774
2611850
+
Pro
TGG
-
¡û
>C171064295
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2954075
2954151
+
Pro
TGG
-
¡û
>C171064326
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709062
708986
-
Pro
TGG
-
¡û
>C171064334
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702735
702659
-
Pro
TGG
-
¡û
>C171064337
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702454
702378
-
Pro
TGG
-
¡û
>C171109214
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417600
1417676
+
Pro
TGG
-
¡û
>C171109242
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1759900
1759976
+
Pro
TGG
-
¡û
>C171109268
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4101614
4101538
-
Pro
TGG
-
¡û
>C171109276
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4095287
4095211
-
Pro
TGG
-
¡û
>C171109279
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4095006
4094930
-
Pro
TGG
-
¡û
>C000836
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4445698
4445622
-
Pro
TGG
[Ensembl]
¡û
>C000839
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4445426
4445350
-
Pro
TGG
[Ensembl]
¡û
>C000856
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4437104
4437028
-
Pro
TGG
[Ensembl]
¡û
>C000859
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4436832
4436756
-
Pro
TGG
[Ensembl]
¡û
>w010453
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2160
2236
+
Pro
TGG
[ENA]
¡û
>w010450
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1888
1964
+
Pro
TGG
[ENA]
¡û
>w010433
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
6068
6144
+
Pro
TGG
[ENA]
¡û
>w010430
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
5796
5872
+
Pro
TGG
[ENA]
¡û
>WENV170674781
LCWY01003320
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
977
1053
+
Pro
TGG
[ENA]
¢þ
>WENV170674905
LCWY01019878
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
16
92
+
Pro
TGG
[ENA]
¢þ
>WENV170675128
LCWZ01007443
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
844
920
+
Pro
TGG
[ENA]
¢þ
>WENV170675225
LCWZ01018657
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
111
187
+
Pro
TGG
[ENA]
¢þ
>WENV170675260
LCWZ01021801
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
341
265
-
Pro
TGG
[ENA]
¢þ
>WENV170675418
LCWZ01067830
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
110
186
+
Pro
TGG
[ENA]
¢þ
>W141561147
JHYF01000002
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
949
1025
+
Pro
TGG
[ENA]
¡û
>W1910548238
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175382
175306
-
Pro
TGG
[ENA]
¡û
>W1910548279
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1185
1261
+
Pro
TGG
[ENA]
¡û
>W1910548282
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1474
1550
+
Pro
TGG
[ENA]
¡û
>C151057262
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1598164
1598240
+
Pro
TGG
[Ensembl]
¡û
>W1511527533
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
267325
267401
+
Pro
TGG
[ENA]
¡û
>W1710506707
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
591
515
-
Pro
TGG
[ENA]
¡û
>W1710506710
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
326
250
-
Pro
TGG
[ENA]
¡û
>W1710520436
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
541225
541149
-
Pro
TGG
[ENA]
¡û
>W1710520439
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
540918
540842
-
Pro
TGG
[ENA]
¡û
>W1710531828
FNPV01000004
Bacillota
Tindallia californiensis [FNPV]
334109
334185
+
Pro
TGG
[ENA]
¡û
>W1710531839
FNPV01000005
Bacillota
Tindallia californiensis [FNPV]
3944
4020
+
Pro
TGG
[ENA]
¡û
>W1710553639
FOHU01000001
Bacillota
Natronincola peptidivorans [FOHU]
518322
518246
-
Pro
TGG
[ENA]
¡û
>W1710553642
FOHU01000001
Bacillota
Natronincola peptidivorans [FOHU]
518041
517965
-
Pro
TGG
[ENA]
¡û
>W1710563817
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
4038
4114
+
Pro
TGG
[ENA]
¡û
>W1710563833
FOQA01000004
Bacillota
Tindallia magadiensis [FOQA]
569
493
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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