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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161217 (13 seq.)
>W131001372
AGYD01000005
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
221045
221121
+
Asp
GTC
[ENA]
¡û
>W131171367
ARGD01000036
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
211594
211518
-
Asp
GTC
[ENA]
¡û
>WENV181000350
ODVU01010684
[ODVU] human metagenome; G_DNA_Anterior nares
113
37
-
Asp
GTC
[ENA]
¡û
>WENV181811299
OGSY01000614
[OGSY] human gut metagenome; fecal sample 5 from infant 8
13066
12990
-
Asp
GTC
[ENA]
¡û
>W141463414
JFJK01000009
Campylobacterota
Campylobacter ureolyticus [JFJK]
148453
148377
-
Asp
GTC
[ENA]
¡û
>W1810187708
PKHU01000003
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
112046
111970
-
Asp
GTC
[ENA]
¡û
>C151092526
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1325525
1325449
-
Asp
GTC
-
¡û
>W2010290795
CABMOL010000009
Campylobacterota
Campylobacter ureolyticus [CABMOL]
148453
148377
-
Asp
GTC
[ENA]
¡û
>W2011817406
UFUU01000002
Campylobacterota
Campylobacter ureolyticus NCTC10941 [UFUU]
172084
172160
+
Asp
GTC
[ENA]
¡û
>W2011818203
UFVL01000004
Campylobacterota
Campylobacter ureolyticus NCTC12015 [UFVL]
1246352
1246276
-
Asp
GTC
[ENA]
¡û
>W2110075078
CACRSK010000001
Campylobacterota
Campylobacter ureolyticus [CACRSK]
407633
407557
-
Asp
GTC
[ENA]
¡û
>C241161442
CP053832
Campylobacterota
Campylobacter ureolyticus LMG 6451 [CP053832]
1482431
1482355
-
Asp
GTC
-
¡û
>W2310017317
BQNW01000001
Campylobacterota
Campylobacter ureolyticus CE91-St25 [BQNW]
1380638
1380562
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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