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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161283 (105 seq.)
>W1710865626
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
1768239
1768163
-
Asp
GTC
[ENA]
¡û
>W1710866320
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1814679
1814603
-
Asp
GTC
[ENA]
¡û
>W1710867128
LMIA01000008
Actinomycetota
Nocardioides sp. Root190 [LMIA]
22721
22795
+
Asp
GTC
[ENA]
¡û
>W1710877362
LMQA01000002
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
804163
804087
-
Asp
GTC
[ENA]
¡û
>W131190803
ASEP01000099
Actinomycetota
Nocardioides sp. CF8 [ASEP]
133467
133391
-
Asp
GTC
[ENA]
¡û
>WENV016543
AACY020465289
Marine microbial communities from Global Ocean Sampling (GOS)
2178
2256
+
Asp
GTC
[ENA]
>WENV180292371
OBIV01412344
[OBIV] soil metagenome; Clay
281
205
-
Asp
GTC
[ENA]
¡û
>WENV180369923
OBOH01010950
[OBOH] marine metagenome; ENVO:00002010
383
309
-
Asp
GTC
[ENA]
¡û
>WENV180650217
OCSY01000173
[OCSY] marine metagenome; 30 L Plastic container
1420
1494
+
Asp
GTC
[ENA]
¡û
>WENV181223246
OFDC01004033
[OFDC] hot springs metagenome; Water
3332
3406
+
Asp
GTC
[ENA]
¡û
>WENV181313800
OFJH01008200
[OFJH] marine metagenome; seawater
322
248
-
Asp
GTC
[ENA]
¡û
>WENV181322678
OFKT01017485
[OFKT] marine metagenome; sea ice
289
363
+
Asp
GTC
[ENA]
¡û
>WENV181323527
OFKY01003671
[OFKY] marine metagenome; sea ice
746
820
+
Asp
GTC
[ENA]
¡û
>WENV181323731
OFKZ01001475
[OFKZ] marine metagenome; sea ice
355
281
-
Asp
GTC
[ENA]
¡û
>WENV181324122
OFLC01000152
[OFLC] marine metagenome; melt pond
1740
1666
-
Asp
GTC
[ENA]
¡û
>WENV181324529
OFLF01000547
[OFLF] marine metagenome; melt pond
2292
2366
+
Asp
GTC
[ENA]
¡û
>WENV181324887
OFLH01028878
[OFLH] marine metagenome; sea ice
488
414
-
Asp
GTC
[ENA]
¡û
>WENV181325335
OFLI01045073
[OFLI] seawater metagenome; seawater
352
278
-
Asp
GTC
[ENA]
¡û
>WENV181385800
OFRK01006559
[OFRK] marine metagenome; sea ice
345
271
-
Asp
GTC
[ENA]
¡û
>WENV181393156
OFRX01060577
[OFRX] seawater metagenome; seawater
139
213
+
Asp
GTC
[ENA]
¡û
>WENV183615290
OOEB01001124
[OOEB] marine metagenome; sea ice
1324
1398
+
Asp
GTC
[ENA]
¡û
>WENV183617313
OOEE01167746
[OOEE] marine metagenome; sea ice
280
354
+
Asp
GTC
[ENA]
¡û
>WENV183618751
OOFO01034376
[OOFO] marine metagenome; seawater
396
322
-
Asp
GTC
[ENA]
¡û
>WENV183620137
OOFR01009032
[OOFR] marine metagenome; seawater
601
675
+
Asp
GTC
[ENA]
¡û
>WENV183620924
OOFT01000035
[OOFT] marine metagenome; sea ice
5052
4978
-
Asp
GTC
[ENA]
¡û
>WENV183625683
OOGG01008484
[OOGG] marine metagenome; sea ice
740
814
+
Asp
GTC
[ENA]
¡û
>WENV183629535
OOGP01062504
[OOGP] marine metagenome; seawater
139
213
+
Asp
GTC
[ENA]
¡û
>WENV170568479
FLMP01043641
[FLMP] seawater metagenome; seawater
716
790
+
Asp
GTC
[ENA]
¡û
>WENV170615889
FUWD012871131
[FUWD] metagenome; unknown
1150
1076
-
Asp
GTC
[ENA]
¡û
>WENV170949552
MEHZ011430703
[MEHZ] marine metagenome; marine surface water
459
533
+
Asp
GTC
[ENA]
¡û
>C181119553
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
539981
540057
+
Asp
GTC
-
¡û
>WENV002129
AACY020059112
Marine microbial communities from Global Ocean Sampling (GOS)
2349
2271
-
Asp
GTC
[ENA]
>C191159900
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
497744
497820
+
Asp
GTC
-
¡û
>C191182460
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
399470
399546
+
Asp
GTC
-
¡û
>W1910181605
BJMD01000032
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
12534
12460
-
Asp
GTC
[ENA]
¡û
>W1910182789
BJNE01000004
Actinomycetota
Glutamicibacter nicotianae NBRC 14234 [BJNE]
231334
231260
-
Asp
GTC
[ENA]
¡û
>W1910182790
BJNE01000004
Actinomycetota
Glutamicibacter nicotianae NBRC 14234 [BJNE]
231077
231003
-
Asp
GTC
[ENA]
¡û
>W1910183716
BJNY01000026
Actinomycetota
Glutamicibacter uratoxydans NBRC 15515 [BJNY]
19316
19242
-
Asp
GTC
[ENA]
¡û
>W1910183717
BJNY01000026
Actinomycetota
Glutamicibacter uratoxydans NBRC 15515 [BJNY]
19061
18985
-
Asp
GTC
[ENA]
¡û
>W1910183755
BJNZ01000019
Actinomycetota
Cellulosimicrobium cellulans NBRC 15516 [BJNZ]
86939
86865
-
Asp
GTC
[ENA]
¡û
>W1810201582
POAG01000018
Actinomycetota
Nocardioides sp. 616 [POAG]
203014
203090
+
Asp
GTC
[ENA]
¡û
>W1810271400
PRKW01000006
Actinomycetota
Arthrobacter pityocampae Tp2 [PRKW]
217946
217872
-
Asp
GTC
[ENA]
¡û
>W1810277212
PSTQ01000014
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
63907
63831
-
Asp
GTC
[ENA]
¡û
>W1810277576
PSTY01000024
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
49450
49374
-
Asp
GTC
[ENA]
¡û
>W1810365257
PVTY01000004
Actinomycetota
Nesterenkonia sandarakina CG 35 [PVTY]
169005
169079
+
Asp
GTC
[ENA]
¡û
>W1810462624
PZYX01000004
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
109803
109727
-
Asp
GTC
[ENA]
¡û
>W1810477853
QAPD01000042
Actinomycetota
Sphaerisporangium cinnabarinum ATCC 31213 [QAPD]
84226
84152
-
Asp
GTC
[ENA]
¡û
>W1810484114
QASM01000015
Actinomycetota
Trueperella pyogenes SH01 [QASM]
4293
4367
+
Asp
GTC
[ENA]
¡û
>W1810534619
QDAE01000006
Actinomycetota
Arthrobacter sp. Bz4 [QDAE]
2814
2888
+
Asp
GTC
[ENA]
¡û
>W1810569978
QEHL01000016
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
30365
30439
+
Asp
GTC
[ENA]
¡û
>W1810609396
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
1701886
1701812
-
Asp
GTC
[ENA]
¡û
>W1810626169
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
1169237
1169313
+
Asp
GTC
[ENA]
¡û
>W1810626212
QHKY01000001
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
1031918
1031842
-
Asp
GTC
[ENA]
¡û
>W1810626885
QHLO01000013
Actinomycetota
Auritidibacter sp. NML120636 [QHLO]
2268
2194
-
Asp
GTC
[ENA]
¡û
>W1810676823
QKMG01000008
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
13989
14063
+
Asp
GTC
[ENA]
¡û
>W1810700963
QMDP01000025
Actinomycetota
Kocuria rhizophila TNDT1 [QMDP]
12872
12946
+
Asp
GTC
[ENA]
¡û
>W1810720412
QNRG01000004
Actinomycetota
Micrococcus sp. KT16 [QNRG]
134775
134849
+
Asp
GTC
[ENA]
¡û
>W1810733606
QOHK01000002
Actinomycetota
Blastococcus sp. TF02-8 [QOHK]
364722
364648
-
Asp
GTC
[ENA]
¡û
>W1810756467
QPFD01000007
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
370866
370942
+
Asp
GTC
[ENA]
¡û
>W1810788296
QREH01000001
Actinomycetota
Citricoccus muralis DSM 14442 [QREH]
2798931
2799005
+
Asp
GTC
[ENA]
¡û
>W1810884982
QUMZ01000001
Actinomycetota
Cellulosimicrobium cellulans ZKA48 [QUMZ]
1070350
1070276
-
Asp
GTC
[ENA]
¡û
>SRA1017005
SRR035082.67816
454 Sequencing (SRP001803)
310
384
+
Asp
GTC
[SRA]
>W2010270923
CABKTE020000002
Actinomycetota
Candidatus Blastococcus massiliensis [CABKTE]
744412
744487
+
Asp
GTC
[ENA]
¡û
>SRA1035098
SRR035089.237221
454 Sequencing (SRP001810)
357
283
-
Asp
GTC
[SRA]
>W2010472421
JAAHFJ010000001
Actinomycetota
Mumia sp. ZJ1417 [JAAHFJ]
648894
648970
+
Asp
GTC
[ENA]
¡û
>W2010472479
JAAHFK010000001
Actinomycetota
Mumia sp. ZJ430 [JAAHFK]
667360
667284
-
Asp
GTC
[ENA]
¡û
>W2010604545
JABJWT010000003
Actinomycetota
Nocardioides sp. MC1495 [JABJWT]
94648
94572
-
Asp
GTC
[ENA]
¡û
>W2010604567
JABJWU010000001
Actinomycetota
Nocardioides sp. Y192 [JABJWU]
149929
149853
-
Asp
GTC
[ENA]
¡û
>W2010670768
JACCBF010000001
Actinomycetota
Nocardioides kongjuensis DSM 19082 [JACCBF]
3289939
3289864
-
Asp
GTC
[ENA]
¡û
>SRA1045560
SRR035093.122443
454 Sequencing (SRP001814)
376
450
+
Asp
GTC
[SRA]
>SRA1045739
SRR035093.160688
454 Sequencing (SRP001814)
327
253
-
Asp
GTC
[SRA]
>SRA1046126
SRR035093.240257
454 Sequencing (SRP001814)
494
420
-
Asp
GTC
[SRA]
>SRA1046734
SRR035093.373069
454 Sequencing (SRP001814)
449
375
-
Asp
GTC
[SRA]
>SRA1046922
SRR035093.419502
454 Sequencing (SRP001814)
248
322
+
Asp
GTC
[SRA]
>SRA1047192
SRR035093.478897
454 Sequencing (SRP001814)
326
252
-
Asp
GTC
[SRA]
>SRA1047294
SRR035093.504038
454 Sequencing (SRP001814)
280
206
-
Asp
GTC
[SRA]
>W2011693577
SSXI01000144
Actinomycetota
Nocardioides bacterium 21Sc5-5 [SSXI]
83807
83732
-
Asp
GTC
[ENA]
¡û
>W2011751887
SZPY01000001
Actinomycetota
Nocardioides sp. dk3543 [SZPY]
183336
183260
-
Asp
GTC
[ENA]
¡û
>W2011985408
VDMP01000014
Actinomycetota
Nocardioides albidus CCTCC AB 2015297 [VDMP]
26356
26281
-
Asp
GTC
[ENA]
¡û
>W2012019475
VFNU01000001
Actinomycetota
Nocardioides sp. SLBN-35 [VFNU]
1156128
1156204
+
Asp
GTC
[ENA]
¡û
>SRA1053850
SRR035098.514542
454 Sequencing (SRP001819)
136
210
+
Asp
GTC
[SRA]
>W2110018903
BMCK01000001
Actinomycetota
Nocardioides daphniae CCM 7403 [BMCK]
314012
313936
-
Asp
GTC
[ENA]
¡û
>W2110303448
JADCLI010000041
Actinomycetota
Pimelobacter simplex 3E [JADCLI]
26136
26212
+
Asp
GTC
[ENA]
¡û
>W2110304696
JADCSA010000017
Actinomycetota
Nocardioides malaquae Y6 [JADCSA]
42395
42469
+
Asp
GTC
[ENA]
¡û
>W2110446478
JAERTX010000001
Actinomycetota
Nocardioides sp. zg-536 [JAERTX]
185359
185283
-
Asp
GTC
[ENA]
¡û
>W2110458375
JAFBBY010000001
Actinomycetota
Nocardioides nitrophenolicus DSM 15529 [JAFBBY]
1608301
1608225
-
Asp
GTC
[ENA]
¡û
>W2110584088
JAGYYC010000005
Actinomycetota
Nocardioides sp. zg-ZUI104 [JAGYYC]
6325
6249
-
Asp
GTC
[ENA]
¡û
>W2110645625
JAHTKU010000004
Actinomycetota
Nocardioides daeguensis 2C1-5 [JAHTKU]
233139
233065
-
Asp
GTC
[ENA]
¡û
>W2110656867
JAHWCI010000008
Actinomycetota
Mumia sp. zg.B17 [JAHWCI]
375867
375943
+
Asp
GTC
[ENA]
¡û
>W2110656909
JAHWCJ010000002
Actinomycetota
Mumia sp. zg.B21 [JAHWCJ]
672397
672321
-
Asp
GTC
[ENA]
¡û
>W2110656944
JAHWCK010000001
Actinomycetota
Mumia sp. zg.B53 [JAHWCK]
1883597
1883521
-
Asp
GTC
[ENA]
¡û
>C211095293
CP053928
Actinomycetota
Nocardioides sp. WS12 [CP053928]
5000497
5000421
-
Asp
GTC
-
¡û
>C211152968
CP061768
Actinomycetota
Nocardioides sp. MC1495 [CP061768]
551526
551602
+
Asp
GTC
-
¡û
>C211330971
CP074406
Actinomycetota
Nocardioides sp. zg-536 [CP074406]
3396530
3396454
-
Asp
GTC
-
¡û
>C231247498
CP087968
Actinomycetota
Nocardioides sp. B-3 [CP087968]
2243249
2243325
+
Asp
GTC
-
¡û
>C241180012
CP059901
Actinomycetota
Mumia sp. ZJ1417 [CP059901]
478299
478223
-
Asp
GTC
-
¡û
>C241253999
CP124681
Actinomycetota
Nocardioides sp. QY071 [CP124681]
4696848
4696774
-
Asp
GTC
-
¡û
>W1610050757
BBGE01000618
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
355
431
+
Asp
GTC
[ENA]
¡û
>W121063483
AJKR01000004
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
44905
44979
+
Asp
GTC
[ENA]
¡û
>W1610625744
LIBA01000291
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
75
1
-
Asp
GTC
[ENA]
¡û
>W1610727972
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
1768239
1768163
-
Asp
GTC
[ENA]
¡û
>W1610728666
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1814679
1814603
-
Asp
GTC
[ENA]
¡û
>W1610729474
LMIA01000008
Actinomycetota
Nocardioides sp. Root190 [LMIA]
22721
22795
+
Asp
GTC
[ENA]
¡û
>W1710047156
BBGE01000618
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
355
431
+
Asp
GTC
[ENA]
¡û
>W1710756871
LIBA01000291
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
75
1
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK