This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161383 (64 seq.)
>W1711409678
MGPB01000005
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
16538
16614
+
Pro
TGG
[ENA]
¡û
>W1712077022
NGUO01000008
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
33785
33861
+
Pro
TGG
[ENA]
¡û
>C017397
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1006150
1006074
-
Pro
TGG
[Ensembl]
¡û
>WENV180020643
FTCZ01007816
[FTCZ] metagenome; soil
2397
2473
+
Pro
TGG
[ENA]
¡û
>WENV181368184
OFQK01001661
[OFQK] freshwater metagenome; Freshwater Lake
758
682
-
Pro
TGG
[ENA]
¡û
>WENV181369875
OFQR01001241
[OFQR] freshwater metagenome; Freshwater Lake
2189
2265
+
Pro
TGG
[ENA]
¡û
>WENV181370179
OFQS01000292
[OFQS] freshwater metagenome; Freshwater Lake
6743
6819
+
Pro
TGG
[ENA]
¡û
>WENV181856617
OGWN01005618
[OGWN] freshwater metagenome; freshwater
1037
1113
+
Pro
TGG
[ENA]
¡û
>W141241336
CAHF01000011
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
647875
647799
-
Pro
TGG
[ENA]
¡û
>WENV170599730
FUWD010088955
[FUWD] metagenome; unknown
646
570
-
Pro
TGG
[ENA]
¡û
>WENV170617406
FUWD012925174
[FUWD] metagenome; unknown
480
404
-
Pro
TGG
[ENA]
¡û
>WENV170617408
FUWD012925175
[FUWD] metagenome; unknown
194
118
-
Pro
TGG
[ENA]
¡û
>WENV170619936
FUWD013023157
[FUWD] metagenome; unknown
91
15
-
Pro
TGG
[ENA]
¡û
>WENV170628059
FUWD013241254
[FUWD] metagenome; unknown
91
15
-
Pro
TGG
[ENA]
¡û
>C181218905
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
464725
464801
+
Pro
TGG
-
¡û
>C181219067
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1547597
1547521
-
Pro
TGG
-
¡û
>W09106284
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
135158
135082
-
Pro
TGG
[ENA]
¡û
>W1911139397
NOXW01000020
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
447397
447473
+
Pro
TGG
[ENA]
¡û
>W1810305897
PTQY01000001
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
387228
387152
-
Pro
TGG
[ENA]
¡û
>W1810330131
PUIP01000007
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
8257
8181
-
Pro
TGG
[ENA]
¡û
>W1810659420
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
1397384
1397460
+
Pro
TGG
[ENA]
¡û
>W1810659421
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
1397562
1397638
+
Pro
TGG
[ENA]
¡û
>W2010268976
CABKRR020000001
Betaproteobacteria
Noviherbaspirillum massiliense [CABKRR]
2067972
2067896
-
Pro
TGG
[ENA]
¡û
>W2011014897
NOXW01000020
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
447397
447473
+
Pro
TGG
[ENA]
¡û
>W2011694850
STGJ01000009
Betaproteobacteria
Crenobacter sp. GY 70310 [STGJ]
162294
162370
+
Pro
TGG
[ENA]
¡û
>W2012399116
WNKX01000001
Betaproteobacteria
Pseudoduganella eburnea JCM 31587 [WNKX]
57794
57718
-
Pro
TGG
[ENA]
¡û
>W2110145180
JAANFB010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-SaBe1-20-A5 [JAANFB]
1618241
1618165
-
Pro
TGG
[ENA]
¡û
>W2110145388
JAANFG010000001
Betaproteobacteria
Polynucleobacter paneuropaeus MG-8-Puso-13 [JAANFG]
613983
613907
-
Pro
TGG
[ENA]
¡û
>W2110145426
JAANFH010000001
Betaproteobacteria
Polynucleobacter paneuropaeus JS-Pas2-20-A10 [JAANFH]
555287
555211
-
Pro
TGG
[ENA]
¡û
>W2110145460
JAANFI010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-Npozz1-10B-G10 [JAANFI]
1319423
1319347
-
Pro
TGG
[ENA]
¡û
>W2110145733
JAANFP010000001
Betaproteobacteria
Polynucleobacter paneuropaeus JS-Kaija-80-A1 [JAANFP]
556566
556490
-
Pro
TGG
[ENA]
¡û
>W2110145811
JAANFR010000001
Betaproteobacteria
Polynucleobacter paneuropaeus JS-Suoal-20-A4 [JAANFR]
665922
665846
-
Pro
TGG
[ENA]
¡û
>W2110146153
JAANGA010000002
Betaproteobacteria
Polynucleobacter paneuropaeus AP-Hutt-20-G10 [JAANGA]
394379
394455
+
Pro
TGG
[ENA]
¡û
>W2110146302
JAANGE010000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NE-20 [JAANGE]
1607257
1607181
-
Pro
TGG
[ENA]
¡û
>W2110146360
JAANGF010000005
Betaproteobacteria
Polynucleobacter paneuropaeus AP-EnzGG-20-H1 [JAANGF]
142825
142901
+
Pro
TGG
[ENA]
¡û
>W2110146565
JAANGL010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-YLGG-20-B7 [JAANGL]
1709663
1709587
-
Pro
TGG
[ENA]
¡û
>W2110146722
JAANGP010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-Roav5-40-G11 [JAANGP]
1078393
1078317
-
Pro
TGG
[ENA]
¡û
>W2110146759
JAANGQ010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-RamGG-20A-F11 [JAANGQ]
1275871
1275947
+
Pro
TGG
[ENA]
¡û
>W2110146793
JAANGR010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-RamGG-20A-D10 [JAANGR]
754438
754514
+
Pro
TGG
[ENA]
¡û
>W2110147076
JAANGY010000002
Betaproteobacteria
Polynucleobacter paneuropaeus AP-ClouGG-20-D9 [JAANGY]
409627
409703
+
Pro
TGG
[ENA]
¡û
>W2110147190
JAANHB010000002
Betaproteobacteria
Polynucleobacter paneuropaeus AP-ClouGG-20-B4 [JAANHB]
411039
411115
+
Pro
TGG
[ENA]
¡û
>W2110147240
JAANHC010000005
Betaproteobacteria
Polynucleobacter paneuropaeus AP-ClouGG-20-A8 [JAANHC]
108362
108438
+
Pro
TGG
[ENA]
¡û
>W2110147344
JAANHF010000002
Betaproteobacteria
Polynucleobacter paneuropaeus AP-AinPum-20-D2 [JAANHF]
607908
607832
-
Pro
TGG
[ENA]
¡û
>W2110272843
JACVPC010000002
Betaproteobacteria
Polynucleobacter sp. AP-RePozz3-80-G7 [JACVPC]
264752
264676
-
Pro
TGG
[ENA]
¡û
>W2110273035
JACVPH010000006
Betaproteobacteria
Polynucleobacter sp. JS-Fieb-80-E5 [JACVPH]
166823
166899
+
Pro
TGG
[ENA]
¡û
>W2110273363
JACVPQ010000001
Betaproteobacteria
Polynucleobacter sp. MWH-Jannik1A5 [JACVPQ]
1836256
1836180
-
Pro
TGG
[ENA]
¡û
>W2110273509
JACVPU010000001
Betaproteobacteria
Polynucleobacter sp. Nonnen-W13 [JACVPU]
856576
856652
+
Pro
TGG
[ENA]
¡û
>W2110273832
JACVQD010000001
Betaproteobacteria
Polynucleobacter sp. UK-Pondora-W15 [JACVQD]
185201
185277
+
Pro
TGG
[ENA]
¡û
>W2110331075
JADKYX010000013
Betaproteobacteria
Massilia rhizosphaerae NEAU-GH312 [JADKYX]
85889
85965
+
Pro
TGG
[ENA]
¡û
>C201000157
AP018441
Betaproteobacteria
Undibacterium sp. YM2 [AP018441]
3478117
3478193
+
Pro
TGG
-
¡û
>C211079674
CP049683
Betaproteobacteria
Polynucleobacter paneuropaeus AP-RePozz10-5-G5 [CP049683]
919546
919470
-
Pro
TGG
-
¡û
>C211118878
CP059068
Betaproteobacteria
Rhodoferax sp. AJA081-3 [CP059068]
1095460
1095384
-
Pro
TGG
-
¡û
>C211144685
CP061287
Betaproteobacteria
Polynucleobacter sp. MWH-Aus1W21 [CP061287]
1050629
1050553
-
Pro
TGG
-
¡û
>C211144710
CP061289
Betaproteobacteria
Polynucleobacter sp. UB-Siik-W21 [CP061289]
970933
971009
+
Pro
TGG
-
¡û
>C211144967
CP061297
Betaproteobacteria
Polynucleobacter asymbioticus MWH-MoIso1 [CP061297]
762339
762415
+
Pro
TGG
-
¡û
>C211145013
CP061298
Betaproteobacteria
Polynucleobacter asymbioticus MWH-Mekk-C3 [CP061298]
984897
984821
-
Pro
TGG
-
¡û
>C211145375
CP061318
Betaproteobacteria
Polynucleobacter sp. AP-Ainpum-60-G11 [CP061318]
819376
819452
+
Pro
TGG
-
¡û
>C241010894
AP027274
Betaproteobacteria
Polynucleobacter sp. TUM22923 [AP027274]
709175
709251
+
Pro
TGG
-
¡û
>C241031796
CP028941
Betaproteobacteria
Polynucleobacter antarcticus LimPoW16 [CP028941]
864350
864426
+
Pro
TGG
-
¡û
>C161043167
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
2460577
2460653
+
Pro
TGG
-
¡û
>C161092376
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
966016
966092
+
Pro
TGG
[Ensembl]
¡û
>WENV057509
AACY023297084
Marine microbial communities from Global Ocean Sampling (GOS)
896
974
+
Pro
TGG
[ENA]
>WENV057825
AACY023307996
Marine microbial communities from Global Ocean Sampling (GOS)
1082
1160
+
Pro
TGG
[ENA]
>W1710512852
FMZS01000010
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
18701
18777
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK