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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161409 (67 seq.)
>W1710874842
LMNX01000004
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
43318
43242
-
Met
CAT
[ENA]
¡û
>W1710875244
LMOF01000008
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
762365
762441
+
Met
CAT
[ENA]
¡û
>W1710893993
LNFH01000261
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
25430
25506
+
Met
CAT
[ENA]
¡û
>WENV180294461
OBIY01165540
[OBIY] beach sand metagenome; beach sand
113
37
-
Met
CAT
[ENA]
¡û
>W141266444
CCMO01000241
Unclassified
bacterium YEK0313 [CCMO]
28966
29042
+
Met
CAT
[ENA]
¡û
>WENV170577335
FRDC01004594
[FRDC] freshwater metagenome; water
8314
8390
+
Met
CAT
[ENA]
¡û
>WENV170577997
FSSH01005218
[FSSH] freshwater metagenome; drinking water
12673
12597
-
Met
CAT
[ENA]
¡û
>WENV170668288
LADL02002506
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
2248
2324
+
Met
CAT
[ENA]
¡û
>WENV170710437
LNFM01001747
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7628
7704
+
Met
CAT
[ENA]
¡û
>WENV170964445
MRWG01012211
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
892
968
+
Met
CAT
[ENA]
¡û
>C181158554
CP027668
Alphaproteobacteria
Phreatobacter cathodiphilus S-12 [CP027668]
1462602
1462526
-
Met
CAT
-
¡û
>C191035827
CP025512
Alphaproteobacteria
Neorhizobium sp. SOG26 [CP025512]
2108924
2108848
-
Met
CAT
-
¡û
>C191170842
CP039690
Alphaproteobacteria
Phreatobacter stygius KCTC 52518 [CP039690]
1112133
1112209
+
Met
CAT
-
¡û
>W141739428
JNNU01000002
Alphaproteobacteria
Neorhizobium vignae [JNNU]
423093
423017
-
Met
CAT
[ENA]
¡û
>W1910698316
MEMM01000099
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 [MEMM]
10097
10021
-
Met
CAT
[ENA]
¡û
>W1810345977
PVBF01000002
Alphaproteobacteria
Neorhizobium tomejilense T20_22 [PVBF]
128647
128571
-
Met
CAT
[ENA]
¡û
>W1810346049
PVBG01000022
Alphaproteobacteria
Neorhizobium tomejilense T17_20 [PVBG]
59738
59814
+
Met
CAT
[ENA]
¡û
>W1810346097
PVBH01000019
Alphaproteobacteria
Neorhizobium tomejilense T11_12 [PVBH]
122326
122402
+
Met
CAT
[ENA]
¡û
>W1810346127
PVBI01000003
Alphaproteobacteria
Neorhizobium sp. T25_13 [PVBI]
397462
397386
-
Met
CAT
[ENA]
¡û
>W1810346157
PVBJ01000001
Alphaproteobacteria
Neorhizobium sp. T25_27 [PVBJ]
9209
9285
+
Met
CAT
[ENA]
¡û
>W1810346204
PVBK01000001
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
368674
368750
+
Met
CAT
[ENA]
¡û
>W1810346256
PVBL01000004
Alphaproteobacteria
Neorhizobium sp. T6_25 [PVBL]
323806
323730
-
Met
CAT
[ENA]
¡û
>W1810346321
PVBM01000013
Alphaproteobacteria
Neorhizobium huautlense DSM 21817 [PVBM]
141794
141718
-
Met
CAT
[ENA]
¡û
>W1810346362
PVBN01000004
Alphaproteobacteria
Neorhizobium alkalisoli DSM 21826 [PVBN]
191644
191720
+
Met
CAT
[ENA]
¡û
>W1810463320
PZZL01000004
Alphaproteobacteria
Phreatobacter oligotrophus DSM 25521 [PZZL]
3024
2948
-
Met
CAT
[ENA]
¡û
>W1810659785
QJKM01000004
Alphaproteobacteria
Rhizobium terrae NAU-18 [QJKM]
275751
275675
-
Met
CAT
[ENA]
¡û
>C151101663
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
2957063
2956987
-
Met
CAT
[Ensembl]
¡û
>C151101711
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
2850908
2850832
-
Met
CAT
[Ensembl]
¡û
>W2010502887
JAALXU010000003
Alphaproteobacteria
Neorhizobium sp. AL 9.2.2 [JAALXU]
289506
289582
+
Met
CAT
[ENA]
¡û
>W2010694937
JACHBU010000003
Alphaproteobacteria
Rhizobium soli AS3.12 [JACHBU]
21567
21491
-
Met
CAT
[ENA]
¡û
>W2010831741
MEMM01000099
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 [MEMM]
10097
10021
-
Met
CAT
[ENA]
¡û
>W2011630897
SMCL01000002
Alphaproteobacteria
Neorhizobium sp. S3-V5DH [SMCL]
450370
450294
-
Met
CAT
[ENA]
¡û
>W2011768515
UBLJ01000013
Alphaproteobacteria
Rhizobiales bacterium [UBLJ]
191519
191443
-
Met
CAT
[ENA]
¡û
>W2011769431
UBMF01000021
Alphaproteobacteria
Rhizobiales bacterium [UBMF]
21697
21621
-
Met
CAT
[ENA]
¡û
>W2011771972
UBOP01000045
Alphaproteobacteria
Rhizobiales bacterium [UBOP]
17247
17171
-
Met
CAT
[ENA]
¡û
>W2011774453
UBQV01000062
Alphaproteobacteria
Rhizobiales bacterium [UBQV]
17248
17172
-
Met
CAT
[ENA]
¡û
>W2011790393
UCEY01000009
Alphaproteobacteria
Rhizobiales bacterium [UCEY]
103547
103623
+
Met
CAT
[ENA]
¡û
>W2011791227
UCFP01000017
Alphaproteobacteria
Rhizobiales bacterium [UCFP]
8777
8853
+
Met
CAT
[ENA]
¡û
>W2011803040
UEIA01000002
Alphaproteobacteria
Rhizobiales bacterium [UEIA]
207545
207621
+
Met
CAT
[ENA]
¡û
>W2012212579
VYYB01000001
Alphaproteobacteria
Neorhizobium galegae Ng37 [VYYB]
3560326
3560250
-
Met
CAT
[ENA]
¡û
>W2012220869
VZUL01000002
Alphaproteobacteria
Neorhizobium galegae Ng87 [VZUL]
3143596
3143520
-
Met
CAT
[ENA]
¡û
>W2012220897
VZUM01000003
Alphaproteobacteria
Neorhizobium galegae Ng110 [VZUM]
51242
51318
+
Met
CAT
[ENA]
¡û
>W2012220952
VZUN01000002
Alphaproteobacteria
Neorhizobium galegae Ng58 [VZUN]
613518
613594
+
Met
CAT
[ENA]
¡û
>W2110291071
JACYUU010000002
Alphaproteobacteria
Rhizobium sp. CFBP 13726 CFBP13726 [JACYUU]
644394
644318
-
Met
CAT
[ENA]
¡û
>W2110291339
JACYUZ010000001
Alphaproteobacteria
Rhizobium sp. CFBP 8752 CFBP8752 [JACYUZ]
717040
717116
+
Met
CAT
[ENA]
¡û
>W2110554328
JAGIOT010000002
Alphaproteobacteria
Rhizobium sp. PvP014 [JAGIOT]
1898327
1898251
-
Met
CAT
[ENA]
¡û
>W2110554673
JAGIOY010000001
Alphaproteobacteria
Rhizobium sp. PvP099 [JAGIOY]
1898323
1898247
-
Met
CAT
[ENA]
¡û
>W2110554924
JAGIPG010000001
Alphaproteobacteria
Neorhizobium galegae DS1978 [JAGIPG]
738014
738090
+
Met
CAT
[ENA]
¡û
>W2110554990
JAGIPH010000002
Alphaproteobacteria
Neorhizobium galegae DS1499 [JAGIPH]
30720
30796
+
Met
CAT
[ENA]
¡û
>W2110606324
JAHHZO010000002
Alphaproteobacteria
Rhizobium sp. CSW-27 [JAHHZO]
457217
457293
+
Met
CAT
[ENA]
¡û
>W1510052884
CCRG01000011
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRG]
158326
158250
-
Met
CAT
[ENA]
¡û
>W1510052914
CCRH01000006
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRH]
265281
265205
-
Met
CAT
[ENA]
¡û
>W1510052971
CCRI01000011
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRI]
94704
94780
+
Met
CAT
[ENA]
¡û
>W1510053026
CCRJ01000017
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
131297
131373
+
Met
CAT
[ENA]
¡û
>W1510053044
CCRK01000005
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
98671
98747
+
Met
CAT
[ENA]
¡û
>W1510053096
CCRL01000005
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRL]
101362
101438
+
Met
CAT
[ENA]
¡û
>W1510053141
CCRM01000008
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRM]
139016
138940
-
Met
CAT
[ENA]
¡û
>W1510053170
CCRN01000002
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRN]
26187
26263
+
Met
CAT
[ENA]
¡û
>C231270134
CP090095
Alphaproteobacteria
Neorhizobium galegae 7g [CP090095]
3190738
3190662
-
Met
CAT
-
¡û
>C231279176
CP090554
Alphaproteobacteria
Neorhizobium galegae VafX2 [CP090554]
3340913
3340837
-
Met
CAT
-
¡û
>W121086623
AKKC01000243
Alphaproteobacteria
Rhizobium sp. CF080 [AKKC]
16582
16658
+
Met
CAT
[ENA]
¡û
>W1610737188
LMNX01000004
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
43318
43242
-
Met
CAT
[ENA]
¡û
>W1610737590
LMOF01000008
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
762365
762441
+
Met
CAT
[ENA]
¡û
>W1610754259
LNFH01000261
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
25430
25506
+
Met
CAT
[ENA]
¡û
>W1710540067
FNWM01000001
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
716458
716534
+
Met
CAT
[ENA]
¡û
>W1710596581
FTMR01000002
Alphaproteobacteria
Rhizobium sp. RU35A [FTMR]
432629
432705
+
Met
CAT
[ENA]
¡û
>W1710606386
FWXU01000001
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
130674
130750
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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