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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161422 (23 seq.)
>WENV015180
AACY020426941
Marine microbial communities from Global Ocean Sampling (GOS)
298
220
-
His
GTG
[ENA]
>WENV180283866
OBID01004755
[OBID] metagenome; sludge
3459
3534
+
His
GTG
[ENA]
¡û
>W141094315
AVCJ01000051
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
99064
99140
+
His
GTG
[ENA]
¡û
>WENV020810
AACY020559010
Marine microbial communities from Global Ocean Sampling (GOS)
1034
1112
+
His
GTG
[ENA]
>WENV170722629
LSQX01236243
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
229
305
+
His
GTG
[ENA]
¡û
>W1810354833
PVLF01000001
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
28326
28250
-
His
GTG
[ENA]
¡û
>W2010702793
JACHHP010000004
Gammaproteobacteria
Chiayiivirga flava DSM 24163 [JACHHP]
473396
473472
+
His
GTG
[ENA]
¡û
>W2012125859
VRTS01000001
Gammaproteobacteria
Lysobacter sp. Alg18-2.2 [VRTS]
448133
448057
-
His
GTG
[ENA]
¡û
>W2012156619
VUOD01000002
Gammaproteobacteria
Arenimonas sp. 3729k [VUOD]
193758
193682
-
His
GTG
[ENA]
¡û
>W2110028509
BMKC01000001
Gammaproteobacteria
Arenimonas soli CGMCC 1.15905 [BMKC]
736255
736331
+
His
GTG
[ENA]
¡û
>W2110567368
JAGQFT020000015
Gammaproteobacteria
Coralloluteibacterium stylophorae LMG 29479 [JAGQFT]
3841
3765
-
His
GTG
[ENA]
¡û
>W2110669355
JAIEUJ010000002
Gammaproteobacteria
Lysobacter sp. GW1-59 [JAIEUJ]
361483
361407
-
His
GTG
[ENA]
¡û
>WENV033758
AACY021552817
Marine microbial communities from Global Ocean Sampling (GOS)
444
522
+
His
GTG
[ENA]
>C211154356
CP061847
Gammaproteobacteria
Lysobacter sp. CW239 [CP061847]
880276
880352
+
His
GTG
-
¡û
>C211178929
CP063656
Gammaproteobacteria
Lysobacter sp. H21R20 [CP063656]
2209102
2209026
-
His
GTG
-
¡û
>C211178977
CP063657
Gammaproteobacteria
Lysobacter sp. H23M41 [CP063657]
2075786
2075710
-
His
GTG
-
¡û
>C211179025
CP063658
Gammaproteobacteria
Lysobacter sp. H23M47 [CP063658]
2088101
2088025
-
His
GTG
-
¡û
>C211180156
CP063772
Gammaproteobacteria
Lysobacter sp. H21R4 [CP063772]
2104581
2104505
-
His
GTG
-
¡û
>W1511511125
JXSS01000028
Gammaproteobacteria
Lysobacter sp. A03 [JXSS]
3018
3094
+
His
GTG
[ENA]
¡û
>WENV000531
AACY020015604
Marine microbial communities from Global Ocean Sampling (GOS)
1538
1616
+
His
GTG
[ENA]
>W1610027240
AVPS01000003
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
271790
271714
-
His
GTG
[ENA]
¡û
>WENV079796
AATN01000971
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
3415
3493
+
His
GTG
[ENA]
>W1710023474
AVPS01000003
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
271790
271714
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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