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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161432 (98 seq.)
>W1711750448
MUMZ01000020
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
39961
39885
-
Val
CAC
[ENA]
¡û
>C171073654
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
2432073
2432149
+
Val
CAC
-
¡û
>C171092304
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
741263
741339
+
Val
CAC
-
¡û
>W131225934
AUDZ01000012
Gammaproteobacteria
Halomonas halocynthiae DSM 14573 [AUDZ]
137361
137437
+
Val
CAC
[ENA]
¡û
>W141093332
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
589493
589569
+
Val
CAC
[ENA]
¡û
>W141152709
AXCA01000013
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
19517
19441
-
Val
CAC
[ENA]
¡û
>W141212653
AZQX01000003
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
28857
28781
-
Val
CAC
[ENA]
¡û
>WENV170294318
CESC01061754
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
107
183
+
Val
CAC
[ENA]
¡û
>WENV170371924
CETS01050401
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1437
1361
-
Val
CAC
[ENA]
¡û
>WENV170487678
CEVO01080133
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
111
187
+
Val
CAC
[ENA]
¡û
>WENV170679828
LFCJ01000690
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7972
8048
+
Val
CAC
[ENA]
¡û
>WENV170966356
MTEX01007460
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
12660
12736
+
Val
CAC
[ENA]
¡û
>W141557598
JHVH01000001
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
42534
42458
-
Val
CAC
[ENA]
¡û
>W1911245446
NSKB01000005
Gammaproteobacteria
Halomonas sp. WRN001 [NSKB]
433385
433461
+
Val
CAC
[ENA]
¡û
>W1810062629
PDOG01000002
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
496888
496964
+
Val
CAC
[ENA]
¡û
>W1810062676
PDOH01000001
Gammaproteobacteria
Halomonas heilongjiangensis 9-2 [PDOH]
70979
70903
-
Val
CAC
[ENA]
¡û
>W1810177439
PJRN01000004
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
74751
74675
-
Val
CAC
[ENA]
¡û
>W1810199953
PNRE01000036
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
70420
70344
-
Val
CAC
[ENA]
¡û
>W1810200003
PNRF01000012
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
255770
255846
+
Val
CAC
[ENA]
¡û
>W1810200065
PNRG01000025
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
29496
29420
-
Val
CAC
[ENA]
¡û
>W1810364760
PVTM01000006
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
68342
68266
-
Val
CAC
[ENA]
¡û
>W1810385352
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
442136
442212
+
Val
CAC
[ENA]
¡û
>W1810385435
PXNT01000003
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
301494
301418
-
Val
CAC
[ENA]
¡û
>W1810423938
PYUD01000001
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
207313
207389
+
Val
CAC
[ENA]
¡û
>W1810425962
PYVV01000002
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
116815
116891
+
Val
CAC
[ENA]
¡û
>W1810426083
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
1094321
1094245
-
Val
CAC
[ENA]
¡û
>W1810608642
QGTM01000002
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
146401
146477
+
Val
CAC
[ENA]
¡û
>W1810624136
QHGY01000002
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
495032
495108
+
Val
CAC
[ENA]
¡û
>W1810758248
QPII01000014
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
24784
24860
+
Val
CAC
[ENA]
¡û
>W1810758284
QPIJ01000005
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
7932
7856
-
Val
CAC
[ENA]
¡û
>W1810760663
QPKI01000010
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
25912
25988
+
Val
CAC
[ENA]
¡û
>W2010099471
BJUK01000054
Gammaproteobacteria
Halomonas pacifica NBRC 102220 [BJUK]
10245
10321
+
Val
CAC
[ENA]
¡û
>W2010103577
BJXU01000147
Gammaproteobacteria
Halomonas cupida NBRC 102219 [BJXU]
33496
33572
+
Val
CAC
[ENA]
¡û
>W2010303692
CABVOU010000036
Gammaproteobacteria
Halomonas sp. 3(2) [CABVOU]
52875
52951
+
Val
CAC
[ENA]
¡û
>W2010449923
JAACZO010000052
Gammaproteobacteria
Halomonas sp. JSM 104105 [JAACZO]
149926
150002
+
Val
CAC
[ENA]
¡û
>W2010681365
JACEFT010000017
Gammaproteobacteria
Halomonas kenyensis DSM 17331 [JACEFT]
91790
91714
-
Val
CAC
[ENA]
¡û
>W2010716810
JACHXP010000012
Gammaproteobacteria
Halomonas cerina CECT 7282 [JACHXP]
103015
102939
-
Val
CAC
[ENA]
¡û
>W2010716881
JACHXQ010000005
Gammaproteobacteria
Halomonas fontilapidosi CECT 7341 [JACHXQ]
188368
188292
-
Val
CAC
[ENA]
¡û
>W2010719035
JACHZF010000006
Gammaproteobacteria
Halomonas campaniensis 5AG [JACHZF]
123788
123712
-
Val
CAC
[ENA]
¡û
>W2011070347
NSKB01000005
Gammaproteobacteria
Halomonas sp. WRN001 [NSKB]
433385
433461
+
Val
CAC
[ENA]
¡û
>W2011485411
RRCU01000001
Gammaproteobacteria
Halomonas sp. YLB-10 [RRCU]
831617
831541
-
Val
CAC
[ENA]
¡û
>W2011532856
SBLD01000001
Gammaproteobacteria
Halomonas sp. TBZ202 [SBLD]
460355
460431
+
Val
CAC
[ENA]
¡û
>W2011617462
SLTR01000017
Gammaproteobacteria
Halomonas sp. 204 [SLTR]
53482
53406
-
Val
CAC
[ENA]
¡û
>W2011647688
SNWH01000006
Gammaproteobacteria
Halomonas ventosae 1_TX [SNWH]
78821
78897
+
Val
CAC
[ENA]
¡û
>W2011651868
SNZJ01000012
Gammaproteobacteria
Halomonas ventosae CECT 5797 [SNZJ]
49392
49468
+
Val
CAC
[ENA]
¡û
>W2011966838
VBUI01000098
Gammaproteobacteria
Halomonas sp. TBZ3 [VBUI]
120
196
+
Val
CAC
[ENA]
¡û
>W2012141897
VTPY01000004
Gammaproteobacteria
Halomonas sp. L5 [VTPY]
72039
71963
-
Val
CAC
[ENA]
¡û
>W2012326937
WHMA01000007
Gammaproteobacteria
Halomonas sp. NO4 [WHMA]
71752
71676
-
Val
CAC
[ENA]
¡û
>W2012434128
WTKP01000007
Gammaproteobacteria
Halomonas sp. ZH2S [WTKP]
155904
155980
+
Val
CAC
[ENA]
¡û
>W2012446511
WUTS01000001
Gammaproteobacteria
Halomonas sp. D1-1 [WUTS]
2766327
2766251
-
Val
CAC
[ENA]
¡û
>W2012446544
WUTT01000001
Gammaproteobacteria
Halomonas alimentaria DSM 15356 [WUTT]
1204671
1204747
+
Val
CAC
[ENA]
¡û
>W2110047444
BMXH01000002
Gammaproteobacteria
Aidingimonas halophila KCTC 12885 [BMXH]
150655
150579
-
Val
CAC
[ENA]
¡û
>W2110051362
BNAE01000001
Gammaproteobacteria
Halomonas urumqiensis CGMCC 1.12917 [BNAE]
1458962
1458886
-
Val
CAC
[ENA]
¡û
>W2110286711
JACXZT010000002
Gammaproteobacteria
Halomonas sp. ML-15 [JACXZT]
253493
253569
+
Val
CAC
[ENA]
¡û
>W2110358989
JADNRL010000024
Gammaproteobacteria
Halomonas sp. KAO [JADNRL]
166538
166614
+
Val
CAC
[ENA]
¡û
>W2110423414
JAEKJT010000004
Gammaproteobacteria
Halomonas litopenaei SN20-17 [JAEKJT]
339849
339773
-
Val
CAC
[ENA]
¡û
>W2110651132
JAHVHM010000002
Gammaproteobacteria
Halomonas sp. DP4Y7-2 [JAHVHM]
346797
346721
-
Val
CAC
[ENA]
¡û
>W2110651397
JAHVHR010000002
Gammaproteobacteria
Halomonas sp. DP5N14-9 [JAHVHR]
340215
340139
-
Val
CAC
[ENA]
¡û
>W2110651778
JAHVHX010000003
Gammaproteobacteria
Halomonas denitrificans DP5Y7-1 [JAHVHX]
345788
345712
-
Val
CAC
[ENA]
¡û
>W2110651832
JAHVHY010000004
Gammaproteobacteria
Halomonas sp. DP5Y7-2 [JAHVHY]
275323
275399
+
Val
CAC
[ENA]
¡û
>W2110652799
JAHVIN010000003
Gammaproteobacteria
Halomonas sp. DP8Y7-1 [JAHVIN]
343816
343740
-
Val
CAC
[ENA]
¡û
>W2110652871
JAHVIO010000009
Gammaproteobacteria
Halomonas sp. DP8Y7-3 [JAHVIO]
277576
277652
+
Val
CAC
[ENA]
¡û
>W2110654098
JAHVJM010000001
Gammaproteobacteria
Halomonas sp. DP1Y21-3 [JAHVJM]
790905
790829
-
Val
CAC
[ENA]
¡û
>W2110655222
JAHVKI010000004
Gammaproteobacteria
Halomonas sp. DP3Y7-1 [JAHVKI]
309947
310023
+
Val
CAC
[ENA]
¡û
>W2110655284
JAHVKJ010000007
Gammaproteobacteria
Halomonas sp. DP3Y7-2 [JAHVKJ]
309947
310023
+
Val
CAC
[ENA]
¡û
>W2110655792
JAHVKS010000002
Gammaproteobacteria
Halomonas sp. DP4Y7-1 [JAHVKS]
346797
346721
-
Val
CAC
[ENA]
¡û
>W2110659477
JAHXBV010000005
Gammaproteobacteria
Halomonas sp. ANAO-440 [JAHXBV]
202272
202348
+
Val
CAC
[ENA]
¡û
>W2110663835
JAHYCA010000002
Gammaproteobacteria
Halomonas sp. Y3S6 [JAHYCA]
534965
535041
+
Val
CAC
[ENA]
¡û
>C201059427
CP035042
Gammaproteobacteria
Halomonas sp. BC-M4-5 [CP035042]
1145854
1145930
+
Val
CAC
-
¡û
>W2110701082
JAIUZN010000006
Gammaproteobacteria
Halomonas denitrificans DP3Y115-1 [JAIUZN]
33235
33311
+
Val
CAC
[ENA]
¡û
>C211093608
CP053381
Gammaproteobacteria
Halomonas sp. MCCC 1A11059 [CP053381]
933660
933736
+
Val
CAC
-
¡û
>C211093673
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
940546
940622
+
Val
CAC
-
¡û
>C211093738
CP053383
Gammaproteobacteria
Halomonas sp. MCCC 1A13718 [CP053383]
939366
939442
+
Val
CAC
-
¡û
>W2110701745
JAIVAB010000006
Gammaproteobacteria
Halomonas denitrificans AmN35-1 [JAIVAB]
420658
420582
-
Val
CAC
[ENA]
¡û
>C211206862
CP065435
Gammaproteobacteria
Halomonas campisalis SS10-MC5 [CP065435]
959016
959092
+
Val
CAC
-
¡û
>W1510071592
CDGR01000103
Gammaproteobacteria
Halomonas salina B6 [CDGR]
74824
74900
+
Val
CAC
[ENA]
¡û
>W2110761521
QTKW01000005
Gammaproteobacteria
Halomonas litopenaei LZD012 [QTKW]
101290
101214
-
Val
CAC
[ENA]
¡û
>C231421402
CP099965
Gammaproteobacteria
Halomonas sp. DN3 [CP099965]
767299
767375
+
Val
CAC
-
¡û
>C231421754
CP099975
Gammaproteobacteria
Halomonas sp. Y3 [CP099975]
880024
880100
+
Val
CAC
-
¡û
>C231426043
CP100360
Gammaproteobacteria
Halomonas sp. 3H [CP100360]
709922
709998
+
Val
CAC
-
¡û
>C231507420
CP107009
Gammaproteobacteria
Halomonas sp. LR3S48 [CP107009]
1115889
1115965
+
Val
CAC
-
¡û
>C231637905
CP121193
Gammaproteobacteria
Halomonas sp. CKK8 [CP121193]
3087442
3087366
-
Val
CAC
-
¡û
>C241046677
CP038437
Gammaproteobacteria
Halomonas binhaiensis Y2R2 [CP038437]
786706
786782
+
Val
CAC
-
¡û
>C241096227
CP045417
Gammaproteobacteria
Halomonas sp. THAF5a [CP045417]
673649
673725
+
Val
CAC
-
¡û
>C241131690
CP048812
Gammaproteobacteria
Halomonas socia CKY01 [CP048812]
439047
438971
-
Val
CAC
-
¡û
>C241153785
CP053032
Gammaproteobacteria
Halomonas sp. PGE1 [CP053032]
1118420
1118496
+
Val
CAC
-
¡û
>C241292921
CP130143
Gammaproteobacteria
Halomonas alkalicola M2 [CP130143]
800203
800279
+
Val
CAC
-
¡û
>C241297810
CP131913
Gammaproteobacteria
Halomonas alkalicola CICC 11012s [CP131913]
1431566
1431490
-
Val
CAC
-
¡û
>W2310018858
BRCY01000054
Gammaproteobacteria
Halomonas sp. NCCP-2165 [BRCY]
4993
4917
-
Val
CAC
[ENA]
¡û
>W1511518458
JXYB01000025
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
41460
41384
-
Val
CAC
[ENA]
¡û
>C161051010
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
931584
931660
+
Val
CAC
-
¡û
>C161068823
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
715031
715107
+
Val
CAC
[Ensembl]
¡û
>W121123975
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
75981
75905
-
Val
CAC
[ENA]
¡û
>W1710519417
FNES01000005
Gammaproteobacteria
Halomonas gudaonensis [FNES]
112057
111981
-
Val
CAC
[ENA]
¡û
>W1710528566
FNNI01000002
Gammaproteobacteria
Aidingimonas halophila [FNNI]
208278
208202
-
Val
CAC
[ENA]
¡û
>W1710539148
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
158261
158337
+
Val
CAC
[ENA]
¡û
>W1710578480
FPBP01000010
Gammaproteobacteria
Halomonas korlensis [FPBP]
90398
90322
-
Val
CAC
[ENA]
¡û
>W1710591856
FRCA01000006
Gammaproteobacteria
Halomonas cupida [FRCA]
237684
237608
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK