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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161445 (65 seq.)
>W1711043870
LRMP01000002
Actinomycetota
Brachybacterium sp. sponge [LRMP]
571032
571106
+
Pro
TGG
[ENA]
¡û
>W1711186257
LWOB01000278
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
1946
1872
-
Pro
TGG
[ENA]
¡û
>W1711503513
MKTR01000013
Actinomycetota
Microbacterium sp. 67-17 [MKTR]
37461
37535
+
Pro
TGG
[ENA]
¡û
>C171060470
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
4205620
4205694
+
Pro
TGG
-
¡û
>W131098100
AORC01000003
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
38998
38924
-
Pro
TGG
[ENA]
¡û
>W131204603
ATCC01000007
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
213307
213383
+
Pro
TGG
[ENA]
¡û
>WENV180114242
OAPS01001532
[OAPS] marine metagenome; sea water
2155
2229
+
Pro
TGG
[ENA]
¢þ
>WENV180210199
OBAL01149428
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
156
230
+
Pro
TGG
[ENA]
¢þ
>W141406673
JDYK01000009
Actinomycetota
Brachybacterium phenoliresistens [JDYK]
145085
145159
+
Pro
TGG
[ENA]
¡û
>WENV170311485
CESM01147824
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
190
264
+
Pro
TGG
[ENA]
¢þ
>WENV170332636
CESW01248004
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
619
545
-
Pro
TGG
[ENA]
¢þ
>WENV170919301
MDTF01007921
[MDTF] marine metagenome; seawater
2581
2507
-
Pro
TGG
[ENA]
¢þ
>WENV170921133
MDTG01008892
[MDTG] marine metagenome; seawater
3401
3475
+
Pro
TGG
[ENA]
¢þ
>WENV170921301
MDTG01011680
[MDTG] marine metagenome; seawater
2875
2801
-
Pro
TGG
[ENA]
¢þ
>C181062019
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
2847598
2847672
+
Pro
TGG
-
¡û
>C181084634
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
3276076
3276002
-
Pro
TGG
-
¡û
>C181084686
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
2730758
2730684
-
Pro
TGG
-
¡û
>C181115693
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
1770423
1770498
+
Pro
TGG
-
¡û
>C181199692
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
438928
439002
+
Pro
TGG
-
¡û
>C191051329
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
3139662
3139588
-
Pro
TGG
-
¡û
>W09108399
ABTF01000007
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
41463
41537
+
Pro
TGG
[ENA]
¡û
>W1910442432
FWFG01000011
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
31968
32042
+
Pro
TGG
[ENA]
¡û
>W1910442478
FWFH01000020
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
9836
9910
+
Pro
TGG
[ENA]
¡û
>W1910442569
FWFI01000014
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
139722
139796
+
Pro
TGG
[ENA]
¡û
>W1910498727
FXXB01000007
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
163750
163676
-
Pro
TGG
[ENA]
¡û
>W1911203271
NRGR01000008
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
369636
369710
+
Pro
TGG
[ENA]
¡û
>W1911203320
NRGS01000005
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
306438
306512
+
Pro
TGG
[ENA]
¡û
>W1911596830
PNHL01000009
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
133102
133028
-
Pro
TGG
[ENA]
¡û
>W1911702209
QOCI01000001
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
484078
484004
-
Pro
TGG
[ENA]
¡û
>W1911726648
QSWH01000003
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
292804
292878
+
Pro
TGG
[ENA]
¡û
>W1911765338
QXCP01000004
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
549718
549792
+
Pro
TGG
[ENA]
¡û
>W1810196907
PNFB01000029
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
7293
7219
-
Pro
TGG
[ENA]
¡û
>W1810277196
PSTQ01000002
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
428890
428814
-
Pro
TGG
[ENA]
¡û
>W1810277358
PSTU01000009
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
121463
121387
-
Pro
TGG
[ENA]
¡û
>W1810277494
PSTX01000008
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
185987
186063
+
Pro
TGG
[ENA]
¡û
>W1810277546
PSTY01000013
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
120393
120317
-
Pro
TGG
[ENA]
¡û
>W1810277601
PSTZ01000006
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
128365
128289
-
Pro
TGG
[ENA]
¡û
>W1810277647
PSUA01000011
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
183556
183630
+
Pro
TGG
[ENA]
¡û
>W1810282031
PSXX01000003
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
32497
32573
+
Pro
TGG
[ENA]
¡û
>W1810282120
PSXZ01000005
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
120481
120405
-
Pro
TGG
[ENA]
¡û
>W1810282167
PSYA01000007
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
211391
211315
-
Pro
TGG
[ENA]
¡û
>W1810282215
PSYB01000007
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
120360
120284
-
Pro
TGG
[ENA]
¡û
>W1810282274
PSYC01000022
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
113730
113654
-
Pro
TGG
[ENA]
¡û
>W1810587381
QFKX01000002
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
589623
589698
+
Pro
TGG
[ENA]
¡û
>W1810756679
QPGF01000010
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
412181
412107
-
Pro
TGG
[ENA]
¡û
>W1810756716
QPGG01000005
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
49965
50039
+
Pro
TGG
[ENA]
¡û
>W1810756782
QPGH01000019
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
228825
228751
-
Pro
TGG
[ENA]
¡û
>W1810756822
QPGI01000009
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
263972
263898
-
Pro
TGG
[ENA]
¡û
>W1810756870
QPGJ01000006
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
224407
224481
+
Pro
TGG
[ENA]
¡û
>W1810756922
QPGK01000011
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
311292
311218
-
Pro
TGG
[ENA]
¡û
>W1810757144
QPGN01000026
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
30210
30284
+
Pro
TGG
[ENA]
¡û
>W1510021914
BCAK01000018
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
3100
3174
+
Pro
TGG
[ENA]
¡û
>C10101543
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
1073551
1073625
+
Pro
TGG
[Ensembl]
¡û
>WENV038642
AACY021949827
Marine microbial communities from Global Ocean Sampling (GOS)
227
149
-
Pro
TGG
[ENA]
>W1511313259
JPSY01000004
Actinomycetota
Microbacterium profundi Shh49 [JPSY]
220679
220755
+
Pro
TGG
[ENA]
¡û
>W11177844
AGBX01000005
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
26832
26906
+
Pro
TGG
[ENA]
¡û
>C161106444
LN849456
Actinomycetota
Devriesea agamarum IMP2 [LN849456]
2746999
2747073
+
Pro
TGG
-
¡û
>W1610051596
BBHA01000109
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
1626
1550
-
Pro
TGG
[ENA]
¡û
>W1610112250
CZJS01000136
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
54804
54880
+
Pro
TGG
[ENA]
¡û
>W1610112528
CZJY01000043
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
130757
130681
-
Pro
TGG
[ENA]
¡û
>W121018116
AGSO01000009
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
167079
167153
+
Pro
TGG
[ENA]
¡û
>W1610885169
LRMP01000002
Actinomycetota
Brachybacterium sp. sponge [LRMP]
571032
571106
+
Pro
TGG
[ENA]
¡û
>W1710047974
BBHA01000109
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
1626
1550
-
Pro
TGG
[ENA]
¡û
>W1710114954
CZJS01000136
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
54804
54880
+
Pro
TGG
[ENA]
¡û
>W1710115232
CZJY01000043
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
130757
130681
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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