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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161515 (121 seq.)
>W1711078238
LSMR01000200
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
8464
8540
+
Arg
CCG
[ENA]
¡û
>W1711129003
LUTR01000035
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
2586
2510
-
Arg
CCG
[ENA]
¡û
>W1711129044
LUTS01000005
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
175947
176023
+
Arg
CCG
[ENA]
¡û
>W1711425152
MIEQ01000078
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
720
644
-
Arg
CCG
[ENA]
¡û
>W1711666784
MRCI01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
116390
116466
+
Arg
CCG
[ENA]
¡û
>W1711666853
MRCJ01000004
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
322054
321978
-
Arg
CCG
[ENA]
¡û
>W131175777
ARJM01000068
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
114420
114344
-
Arg
CCG
[ENA]
¡û
>W131179619
ARMN01000026
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
397455
397379
-
Arg
CCG
[ENA]
¡û
>W131222069
AUAZ01000006
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
137924
137848
-
Arg
CCG
[ENA]
¡û
>w015074
AAOW01000001
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
39123
39201
+
Arg
CCG
[ENA]
¡û
>WENV180102880
OAOZ01040330
[OAOZ] marine metagenome; ENVO:00002010
168
92
-
Arg
CCG
[ENA]
¡û
>WENV180115913
OAPT01064812
[OAPT] marine metagenome; seawater
138
214
+
Arg
CCG
[ENA]
¡û
>WENV180214575
OBAP01014066
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
41
117
+
Arg
CCG
[ENA]
¡û
>WENV180277069
OBHV01048353
[OBHV] metagenome; water
183
107
-
Arg
CCG
[ENA]
¡û
>WENV180356646
OBNL01003559
[OBNL] marine metagenome; ENVO:00002010
124
48
-
Arg
CCG
[ENA]
¡û
>WENV180383240
OBOU01014083
[OBOU] marine metagenome; ENV:00002010
367
443
+
Arg
CCG
[ENA]
¡û
>WENV180383637
OBOV01003529
[OBOV] marine metagenome; ENV:00002010
1219
1295
+
Arg
CCG
[ENA]
¡û
>WENV180396554
OBPV01019264
[OBPV] marine metagenome; ENVO:00002010
324
248
-
Arg
CCG
[ENA]
¡û
>WENV180399063
OBQE01034211
[OBQE] marine metagenome; ENVO.00002150
313
237
-
Arg
CCG
[ENA]
¡û
>WENV181163198
OEIO01138866
[OEIO] marine metagenome; sea ice
225
301
+
Arg
CCG
[ENA]
¡û
>WENV181309525
OFIW01003561
[OFIW] marine metagenome; seawater
91
15
-
Arg
CCG
[ENA]
¡û
>WENV181313694
OFJH01001154
[OFJH] marine metagenome; seawater
352
275
-
Arg
CCG
[ENA]
¡û
>WENV181320725
OFKI01011050
[OFKI] marine metagenome; seawater
637
713
+
Arg
CCG
[ENA]
¡û
>WENV181325625
OFLJ01009527
[OFLJ] seawater metagenome; seawater
580
657
+
Arg
CCG
[ENA]
¡û
>WENV181325962
OFLJ01056945
[OFLJ] seawater metagenome; seawater
75
1
-
Arg
CCG
[ENA]
¡û
>WENV181392326
OFRW01026918
[OFRW] seawater metagenome; seawater
443
367
-
Arg
CCG
[ENA]
¡û
>WENV182541172
OJAS01000793
[OJAS] seawater metagenome; Sea water
2399
2475
+
Arg
CCG
[ENA]
¡û
>WENV182543231
OJBA01005737
[OJBA] seawater metagenome; Sea water
760
836
+
Arg
CCG
[ENA]
¡û
>WENV182548041
OJBV01000029
[OJBV] seawater metagenome; Sea water
28216
28292
+
Arg
CCG
[ENA]
¡û
>WENV182550414
OJCA01001663
[OJCA] seawater metagenome; Sea water
557
481
-
Arg
CCG
[ENA]
¡û
>WENV182551205
OJCC01000003
[OJCC] seawater metagenome; Sea water
1964
1887
-
Arg
CCG
[ENA]
¡û
>WENV182554053
OJCT01000097
[OJCT] seawater metagenome; Sea water
4992
5068
+
Arg
CCG
[ENA]
¡û
>WENV182556759
OJDH01000053
[OJDH] seawater metagenome; Sea water
54893
54817
-
Arg
CCG
[ENA]
¡û
>WENV182562814
OJEA01003658
[OJEA] seawater metagenome; Sea water
1420
1496
+
Arg
CCG
[ENA]
¡û
>WENV182563405
OJEC01000035
[OJEC] seawater metagenome; Sea water
587
511
-
Arg
CCG
[ENA]
¡û
>WENV182564769
OJEF01005855
[OJEF] seawater metagenome; Sea water
2642
2719
+
Arg
CCG
[ENA]
¡û
>WENV182565280
OJEH01001487
[OJEH] seawater metagenome; Sea water
4784
4860
+
Arg
CCG
[ENA]
¡û
>WENV182568480
OJEU01002615
[OJEU] seawater metagenome; Sea water
540
617
+
Arg
CCG
[ENA]
¡û
>WENV182569412
OJEZ01000078
[OJEZ] seawater metagenome; Sea water
12531
12607
+
Arg
CCG
[ENA]
¡û
>WENV182570269
OJFC01000656
[OJFC] seawater metagenome; Sea water
6454
6531
+
Arg
CCG
[ENA]
¡û
>WENV182571480
OJFK01000097
[OJFK] seawater metagenome; Sea water
2625
2549
-
Arg
CCG
[ENA]
¡û
>WENV182578176
OJGM01007737
[OJGM] seawater metagenome; Sea water
116
40
-
Arg
CCG
[ENA]
¡û
>WENV182578352
OJGN01000866
[OJGN] seawater metagenome; Sea water
1677
1601
-
Arg
CCG
[ENA]
¡û
>WENV182583842
OJHF01000109
[OJHF] seawater metagenome; Sea water
23030
23106
+
Arg
CCG
[ENA]
¡û
>WENV182589532
OJID01010120
[OJID] seawater metagenome; Sea water
177
253
+
Arg
CCG
[ENA]
¡û
>WENV182589711
OJIG01000068
[OJIG] seawater metagenome; Sea water
2603
2679
+
Arg
CCG
[ENA]
¡û
>WENV182590032
OJIH01000026
[OJIH] seawater metagenome; Sea water
1690
1614
-
Arg
CCG
[ENA]
¡û
>WENV182592225
OJIQ01004290
[OJIQ] seawater metagenome; Sea water
414
338
-
Arg
CCG
[ENA]
¡û
>WENV182594018
OJIV01000064
[OJIV] seawater metagenome; Sea water
28955
29031
+
Arg
CCG
[ENA]
¡û
>WENV183057489
OLHL01003814
[OLHL] seawater metagenome; Sea water
2285
2209
-
Arg
CCG
[ENA]
¡û
>WENV183058517
OLHR01000542
[OLHR] seawater metagenome; Sea water
2648
2724
+
Arg
CCG
[ENA]
¡û
>WENV183060320
OLHX01002861
[OLHX] seawater metagenome; Sea water
1545
1621
+
Arg
CCG
[ENA]
¡û
>WENV183061507
OLHZ01021990
[OLHZ] seawater metagenome; Sea water
229
153
-
Arg
CCG
[ENA]
¡û
>WENV183619482
OOFQ01009562
[OOFQ] marine metagenome; seawater
580
657
+
Arg
CCG
[ENA]
¡û
>WENV183619836
OOFQ01059433
[OOFQ] marine metagenome; seawater
75
1
-
Arg
CCG
[ENA]
¡û
>WENV183620381
OOFR01046118
[OOFR] marine metagenome; seawater
230
154
-
Arg
CCG
[ENA]
¡û
>WENV183625405
OOGF01024422
[OOGF] marine metagenome; seawater
330
254
-
Arg
CCG
[ENA]
¡û
>WENV183626409
OOGI01002832
[OOGI] marine metagenome; seawater
343
266
-
Arg
CCG
[ENA]
¡û
>WENV183626652
OOGJ01004506
[OOGJ] marine metagenome; seawater
486
560
+
Arg
CCG
[ENA]
¡û
>WENV183626984
OOGK01018194
[OOGK] marine metagenome; seawater
555
479
-
Arg
CCG
[ENA]
¡û
>WENV183630488
OOGS01024349
[OOGS] marine metagenome; seawater
460
384
-
Arg
CCG
[ENA]
¡û
>WENV183630867
OOGU01005538
[OOGU] marine metagenome; sea ice
1955
2032
+
Arg
CCG
[ENA]
¡û
>WENV183717375
PDWJ01000824
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
42640
42716
+
Arg
CCG
[ENA]
¡û
>WENV170112061
CEGC01005671
[CEGC] microbial mat metagenome; grass silage
628
552
-
Arg
CCG
[ENA]
¡û
>WENV170112170
CEGD01006355
[CEGD] microbial mat metagenome; grass silage
345
269
-
Arg
CCG
[ENA]
¡û
>WENV170112286
CEGE01001049
[CEGE] microbial mat metagenome; grass silage
247
171
-
Arg
CCG
[ENA]
¡û
>WENV170112501
CEGF01001753
[CEGF] microbial mat metagenome; grass silage
633
709
+
Arg
CCG
[ENA]
¡û
>WENV170262855
CERC01001328
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8086
8010
-
Arg
CCG
[ENA]
¡û
>WENV170265528
CERD01208566
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
584
660
+
Arg
CCG
[ENA]
¡û
>WENV170298322
CESF01090500
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175
99
-
Arg
CCG
[ENA]
¡û
>WENV170325681
CEST01040894
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
163
239
+
Arg
CCG
[ENA]
¡û
>WENV170567321
FLMP01000015
[FLMP] seawater metagenome; seawater
39145
39222
+
Arg
CCG
[ENA]
¡û
>WENV170568470
FLMP01042677
[FLMP] seawater metagenome; seawater
449
523
+
Arg
CCG
[ENA]
¡û
>WENV170822449
MDSY01040117
[MDSY] marine metagenome; seawater
817
893
+
Arg
CCG
[ENA]
¡û
>WENV170921462
MDTG01014823
[MDTG] marine metagenome; seawater
1179
1103
-
Arg
CCG
[ENA]
¡û
>WENV170952861
MEHZ011618481
[MEHZ] marine metagenome; marine surface water
829
753
-
Arg
CCG
[ENA]
¡û
>W1810400711
PYGI01000011
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
18110
18034
-
Arg
CCG
[ENA]
¡û
>W1810680821
QKRX01000022
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
43293
43369
+
Arg
CCG
[ENA]
¡û
>W2010683134
JACEMT010000051
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
110085
110161
+
Arg
CCG
[ENA]
¡û
>W2011482940
RQXW01000002
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
103957
104033
+
Arg
CCG
[ENA]
¡û
>W2011522279
SACQ01000002
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
336009
335933
-
Arg
CCG
[ENA]
¡û
>W2011633661
SMFU01000009
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
596936
596860
-
Arg
CCG
[ENA]
¡û
>W2011670870
SPLL01000004
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
132887
132811
-
Arg
CCG
[ENA]
¡û
>W2012230778
WBOL01000012
Gammaproteobacteria
Nitrincola schmidtii NCAIM B.02626 [WBOL]
46983
47059
+
Arg
CCG
[ENA]
¡û
>W2012235744
WBYG01000003
Gammaproteobacteria
Marinobacterium sp. xm-a-121 [WBYG]
174906
174982
+
Arg
CCG
[ENA]
¡û
>W2012235966
WBYK01000006
Gammaproteobacteria
Marinobacterium sp. xm-d-509 [WBYK]
41063
41139
+
Arg
CCG
[ENA]
¡û
>W2012236148
WBYO01000003
Gammaproteobacteria
Marinobacterium sp. xm-d-564 [WBYO]
102239
102163
-
Arg
CCG
[ENA]
¡û
>W2012236215
WBYP01000003
Gammaproteobacteria
Marinobacterium sp. xm-d-579 [WBYP]
170742
170666
-
Arg
CCG
[ENA]
¡û
>W2012236275
WBYQ01000006
Gammaproteobacteria
Marinobacterium sp. xm-g-48 [WBYQ]
95485
95409
-
Arg
CCG
[ENA]
¡û
>W2012236454
WBYU01000003
Gammaproteobacteria
Marinobacterium sp. xm-v-233 [WBYU]
102914
102990
+
Arg
CCG
[ENA]
¡û
>W2110269377
JACVEW010000018
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
44803
44879
+
Arg
CCG
[ENA]
¡û
>W2110313365
JADEYS010000001
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
122398
122474
+
Arg
CCG
[ENA]
¡û
>W2110496081
JAFFZO010000025
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
35022
35098
+
Arg
CCG
[ENA]
¡û
>W2110496145
JAFFZP010000022
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
34760
34836
+
Arg
CCG
[ENA]
¡û
>W2110602342
JAHHDZ010000001
Gammaproteobacteria
Neptunomonas phycophila 3B05 [JAHHDZ]
793862
793786
-
Arg
CCG
[ENA]
¡û
>W2110612283
JAHKQE010000012
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
82657
82733
+
Arg
CCG
[ENA]
¡û
>W2110639305
JAHQZT010000023
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
20189
20265
+
Arg
CCG
[ENA]
¡û
>W2110683920
JAILYN010000012
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
94175
94251
+
Arg
CCG
[ENA]
¡û
>C211000072
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
199874
199950
+
Arg
CCG
-
¡û
>C211032065
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
60029
60105
+
Arg
CCG
-
¡û
>C231011456
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
239044
239120
+
Arg
CCG
-
¡û
>C231019746
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
199876
199952
+
Arg
CCG
-
¡û
>C231019859
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
3678058
3677982
-
Arg
CCG
-
¡û
>C231131078
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
3408898
3408822
-
Arg
CCG
-
¡û
>C231313069
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
65642
65718
+
Arg
CCG
-
¡û
>C241010930
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1932697
1932773
+
Arg
CCG
-
¡û
>W1511576977
LAQF01000050
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
10315
10391
+
Arg
CCG
[ENA]
¡û
>W11170421
AFPL01000043
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
22093
22017
-
Arg
CCG
[ENA]
¡û
>WENV050688
AACY022894055
Marine microbial communities from Global Ocean Sampling (GOS)
724
648
-
Arg
CCG
[ENA]
>C161091133
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
209517
209593
+
Arg
CCG
[Ensembl]
¡û
>W1610062731
BCNS01000174
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1342
1418
+
Arg
CCG
[ENA]
¡û
>WENV069194
AACY023756320
Marine microbial communities from Global Ocean Sampling (GOS)
1151
1227
+
Arg
CCG
[ENA]
>WENV076742
AACY024108384
Marine microbial communities from Global Ocean Sampling (GOS)
997
921
-
Arg
CCG
[ENA]
>W1610917254
LSMR01000200
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
8464
8540
+
Arg
CCG
[ENA]
¡û
>W1610940076
LUTR01000035
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
2586
2510
-
Arg
CCG
[ENA]
¡û
>W1610940117
LUTS01000005
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
175947
176023
+
Arg
CCG
[ENA]
¡û
>W1710060207
BCNS01000174
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1342
1418
+
Arg
CCG
[ENA]
¡û
>W1710533774
FNRJ01000015
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
32627
32551
-
Arg
CCG
[ENA]
¡û
>W1710539747
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
423391
423315
-
Arg
CCG
[ENA]
¡û
>W1710551400
FOGB01000002
Gammaproteobacteria
Amphritea atlantica [FOGB]
336619
336695
+
Arg
CCG
[ENA]
¡û
>W1710596411
FTMN01000011
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
22143
22067
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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