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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161515 (14 seq.)
>W131182121
ARQC01000221
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
1082
1158
+
His
GTG
[ENA]
¡û
>C024105
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
1342564
1342640
+
His
GTG
[Ensembl]
¡û
>WENV170008773
APHM01005520
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1082
1158
+
His
GTG
[ENA]
¢þ
>C181192094
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
1379477
1379552
+
His
GTG
-
¡û
>C191072358
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
1346165
1346240
+
His
GTG
-
¡û
>C191072402
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
1349313
1349388
+
His
GTG
-
¡û
>C191072448
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
1459313
1459388
+
His
GTG
-
¡û
>C191072492
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1375771
1375846
+
His
GTG
-
¡û
>C191072537
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
1416790
1416865
+
His
GTG
-
¡û
>W1910870040
NCQX01000013
Rhodothermota
Salinibacter ruber SP273 [NCQX]
23620
23695
+
His
GTG
[ENA]
¡û
>W1910870081
NCQY01000004
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
244
168
-
His
GTG
[ENA]
¡û
>W1910870126
NCQZ01000016
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
18368
18292
-
His
GTG
[ENA]
¡û
>W1910870175
NCRA01000006
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
102393
102317
-
His
GTG
[ENA]
¡û
>C131018224
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
1439286
1439362
+
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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