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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161525 (16 seq.)
>C024141
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
49277
49204
-
Val
TAC
[Ensembl]
¡û
>WENV170661118
JXWU01108345
[JXWU] soil metagenome; rice field; organic control Plot
541
465
-
Val
TAC
[ENA]
¢þ
>C181192130
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
62012
61938
-
Val
TAC
-
¡û
>C191072394
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
48492
48418
-
Val
TAC
-
¡û
>C191072440
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
49776
49702
-
Val
TAC
-
¡û
>C191072484
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
49580
49506
-
Val
TAC
-
¡û
>C191072529
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
48516
48442
-
Val
TAC
-
¡û
>C191072573
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
49524
49450
-
Val
TAC
-
¡û
>W1910785969
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
2569515
2569441
-
Val
TAC
[ENA]
¡û
>W1910870048
NCQX01000032
Rhodothermota
Salinibacter ruber SP273 [NCQX]
13713
13639
-
Val
TAC
[ENA]
¡û
>W1910870069
NCQY01000001
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
1022
947
-
Val
TAC
[ENA]
¡û
>W1910870150
NCQZ01000044
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
33128
33203
+
Val
TAC
[ENA]
¡û
>W1910870199
NCRA01000036
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
67227
67302
+
Val
TAC
[ENA]
¡û
>W1910870217
NCRB01000009
Rhodothermota
Salinivenus iranica CB7 [NCRB]
3989
4063
+
Val
TAC
[ENA]
¡û
>W1910870295
NCRC01000057
Rhodothermota
Salinivenus lutea DBO [NCRC]
4321
4246
-
Val
TAC
[ENA]
¡û
>C131018260
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
49565
49491
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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