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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161532 (42 seq.)
>W1710808015
LKDJ01000012
Gammaproteobacteria
Acinetobacter bereziniae [LKDJ]
2982
2906
-
Arg
TCT
[ENA]
¡û
>W1710862107
LMED01000010
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
75186
75262
+
Arg
TCT
[ENA]
¡û
>W1711269025
LZDN01000006
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
62959
62883
-
Arg
TCT
[ENA]
¡û
>W1711333449
MBPR02000011
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
111861
111937
+
Arg
TCT
[ENA]
¡û
>W1712003129
NEGA01000008
Gammaproteobacteria
Acinetobacter sp. ANC 3903 [NEGA]
117563
117487
-
Arg
TCT
[ENA]
¡û
>W1712003218
NEGB01000010
Gammaproteobacteria
Acinetobacter silvestris ANC 4999 [NEGB]
2860
2784
-
Arg
TCT
[ENA]
¡û
>W1712003405
NEGE01000013
Gammaproteobacteria
Acinetobacter sp. ANC 4169 [NEGE]
1020
944
-
Arg
TCT
[ENA]
¡û
>W1712084382
NHRM01000012
Gammaproteobacteria
Acinetobacter wuhouensis WCHA62 [NHRM]
2939
2863
-
Arg
TCT
[ENA]
¡û
>W131038016
AMFQ01000039
Gammaproteobacteria
Acinetobacter sp. WC-743 [AMFQ]
78421
78497
+
Arg
TCT
[ENA]
¡û
>W131113660
APOS01000035
Gammaproteobacteria
Acinetobacter guillouiae CIP 63.46 [APOS]
44331
44255
-
Arg
TCT
[ENA]
¡û
>W131114722
APPJ01000006
Gammaproteobacteria
Acinetobacter guillouiae NIPH 991 [APPJ]
3325
3249
-
Arg
TCT
[ENA]
¡û
>W131114803
APPK01000032
Gammaproteobacteria
Acinetobacter bereziniae NIPH 3 [APPK]
3107
3031
-
Arg
TCT
[ENA]
¡û
>W131116310
APQG01000021
Gammaproteobacteria
Acinetobacter bereziniae CIP 70.12 [APQG]
4481
4405
-
Arg
TCT
[ENA]
¡û
>W131193938
ASQG01000026
Gammaproteobacteria
Acinetobacter guillouiae MSP4-18 [ASQG]
41238
41162
-
Arg
TCT
[ENA]
¡û
>WENV180711650
ODFQ01000198
[ODFQ] human metagenome; G_DNA_Anterior nares
4267
4191
-
Arg
TCT
[ENA]
¢þ
>WENV180966792
ODUR01011169
[ODUR] human metagenome; G_DNA_Anterior nares
296
372
+
Arg
TCT
[ENA]
¢þ
>WENV180972534
ODUV01006123
[ODUV] human metagenome; G_DNA_Anterior nares
490
414
-
Arg
TCT
[ENA]
¢þ
>W141177251
AYER01000015
Gammaproteobacteria
Acinetobacter nectaris CIP 110549 [AYER]
4973
4897
-
Arg
TCT
[ENA]
¡û
>W141238582
BBLJ01000027
Gammaproteobacteria
Acinetobacter bereziniae [BBLJ]
2793
2717
-
Arg
TCT
[ENA]
¡û
>C181030818
CP018259
Gammaproteobacteria
Acinetobacter bereziniae XH901 [CP018259]
3814945
3814869
-
Arg
TCT
-
¡û
>C181197107
CP031222
Gammaproteobacteria
Aquirhabdus parva HYN0046 [CP031222]
1292014
1292090
+
Arg
TCT
-
¡û
>C191000147
AP014630
Gammaproteobacteria
Acinetobacter guillouiae NBRC 110550 [AP014630]
3889862
3889786
-
Arg
TCT
-
¡û
>C191078935
CP031716
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [CP031716]
775462
775538
+
Arg
TCT
-
¡û
>C191101036
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
787847
787923
+
Arg
TCT
-
¡û
>W1910637795
LQXQ01000038
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
37699
37775
+
Arg
TCT
[ENA]
¡û
>W1910921977
NIFO01000030
Gammaproteobacteria
Acinetobacter piscicola LW15 [NIFO]
39982
40058
+
Arg
TCT
[ENA]
¡û
>W1910921982
NIFO01000074
Gammaproteobacteria
Acinetobacter piscicola LW15 [NIFO]
237
161
-
Arg
TCT
[ENA]
¡û
>W1911490767
OANT01000001
Gammaproteobacteria
Acinetobacter puyangensis ANC 4466 [OANT]
488685
488761
+
Arg
TCT
[ENA]
¡û
>W1911749086
QWFV01000041
Gammaproteobacteria
Acinetobacter bereziniae 374/14 [QWFV]
188
112
-
Arg
TCT
[ENA]
¡û
>W1510016056
BBRY01000013
Gammaproteobacteria
Acinetobacter guillouiae KCTC 23200 [BBRY]
103184
103260
+
Arg
TCT
[ENA]
¡û
>W1510069427
CDEL01000177
Gammaproteobacteria
Acinetobacter bereziniae CHI-40-1 [CDEL]
79163
79239
+
Arg
TCT
[ENA]
¡û
>W1511452665
JVEK01000258
Gammaproteobacteria
Acinetobacter bereziniae 507_ABAU [JVEK]
277
201
-
Arg
TCT
[ENA]
¡û
>W1511595604
LBNA01000040
Gammaproteobacteria
Acinetobacter sp. Ag2 [LBNA]
3035
2959
-
Arg
TCT
[ENA]
¡û
>W11163735
AFIE01000013
Gammaproteobacteria
Acinetobacter sp. P8-3-8 [AFIE]
71655
71731
+
Arg
TCT
[ENA]
¡û
>C161083276
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
691132
691208
+
Arg
TCT
[Ensembl]
¡û
>W121047408
AIEI01000008
Gammaproteobacteria
Acinetobacter bereziniae LMG 1003 [AIEI]
1124
1048
-
Arg
TCT
[ENA]
¡û
>W1610672119
LKDJ01000012
Gammaproteobacteria
Acinetobacter bereziniae [LKDJ]
2982
2906
-
Arg
TCT
[ENA]
¡û
>W1610724453
LMED01000010
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
75186
75262
+
Arg
TCT
[ENA]
¡û
>W1611029837
LZDN01000006
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
62959
62883
-
Arg
TCT
[ENA]
¡û
>W1611065609
MBPR01000160
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
111861
111937
+
Arg
TCT
[ENA]
¡û
>W1710511087
FMYL01000001
Gammaproteobacteria
Acinetobacter boissieri [FMYL]
2987
2911
-
Arg
TCT
[ENA]
¡û
>W1710610428
FZLN01000003
Gammaproteobacteria
Acinetobacter apis [FZLN]
303534
303610
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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