This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161556 (66 seq.)
>W1711660288
MQSM01000013
Bacillota
Streptococcus pneumoniae [MQSM]
47026
46951
-
Pro
TGG
[ENA]
¡û
>WENV182150484
OHLI01003267
[OHLI] human gut metagenome; feces
3467
3543
+
Pro
TGG
[ENA]
¡û
>WENV182837190
OKGE01005784
[OKGE] human gut metagenome; human gut
492
565
+
Pro
TGG
[ENA]
¡û
>WENV183140285
OLOI01015241
[OLOI] human gut metagenome; faeces
1199
1275
+
Pro
TGG
[ENA]
¡û
>WENV183165415
OLOX01005171
[OLOX] human gut metagenome; faeces
6429
6505
+
Pro
TGG
[ENA]
¡û
>WENV183267121
OLRT01049136
[OLRT] human gut metagenome; faeces
630
554
-
Pro
TGG
[ENA]
¡û
>WENV170574137
FLYM01008595
[FLYM] hot springs metagenome; Sediment
348
272
-
Pro
TGG
[ENA]
¡û
>C191002794
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
297880
297953
+
Pro
TGG
-
¡û
>C191002813
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
1850102
1850029
-
Pro
TGG
-
¡û
>C191056107
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
129142
129218
+
Pro
TGG
-
¡û
>C191056116
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
268776
268852
+
Pro
TGG
-
¡û
>C191056165
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
2965293
2965217
-
Pro
TGG
-
¡û
>W1910551021
FZRJ01000020
Bacillota
Bacillus massiliogabonensis Marseille-P2639 [FZRJ]
523
597
+
Pro
TGG
[ENA]
¡û
>W1910551035
FZRJ01000022
Bacillota
Bacillus massiliogabonensis Marseille-P2639 [FZRJ]
3519
3593
+
Pro
TGG
[ENA]
¡û
>W1911118392
NOKQ01000276
Bacillota
Planococcaceae bacterium VT-49 [NOKQ]
1087
1163
+
Pro
TGG
[ENA]
¡û
>W1911495155
OBMQ01000006
Bacillota
Lysinibacillus xyleni JC22 [OBMQ]
902
978
+
Pro
TGG
[ENA]
¡û
>W1911495222
OBMQ01000031
Bacillota
Lysinibacillus xyleni JC22 [OBMQ]
331
255
-
Pro
TGG
[ENA]
¡û
>W1810426769
PYWJ01000053
Bacillota
Ureibacillus chungkukjangi 2RL32 [PYWJ]
961
1037
+
Pro
TGG
[ENA]
¡û
>W1810426782
PYWJ01000057
Bacillota
Ureibacillus chungkukjangi 2RL32 [PYWJ]
9602
9526
-
Pro
TGG
[ENA]
¡û
>W1810426800
PYWJ01000110
Bacillota
Ureibacillus chungkukjangi 2RL32 [PYWJ]
412
336
-
Pro
TGG
[ENA]
¡û
>W1810453714
PZSB01000025
Bacillota
Staphylococcus aureus CM133 [PZSB]
358
285
-
Pro
TGG
[ENA]
¡û
>W1810453977
PZSG01000021
Bacillota
Staphylococcus aureus CM105 [PZSG]
314
241
-
Pro
TGG
[ENA]
¡û
>W1810454776
PZSW01000025
Bacillota
Staphylococcus aureus CM7 [PZSW]
38890
38963
+
Pro
TGG
[ENA]
¡û
>W1810457150
PZUQ01000023
Bacillota
Staphylococcus aureus CM125 [PZUQ]
314
241
-
Pro
TGG
[ENA]
¡û
>W1810457973
PZVG01000022
Bacillota
Staphylococcus aureus CM108 [PZVG]
314
241
-
Pro
TGG
[ENA]
¡û
>W1810458080
PZVI01000022
Bacillota
Staphylococcus aureus CM106 [PZVI]
358
285
-
Pro
TGG
[ENA]
¡û
>W1810459258
PZWF01000021
Bacillota
Staphylococcus aureus CM77 [PZWF]
38890
38963
+
Pro
TGG
[ENA]
¡û
>W1810460979
PZXM01000021
Bacillota
Staphylococcus aureus CM41 [PZXM]
38890
38963
+
Pro
TGG
[ENA]
¡û
>W1810672375
QJTJ01000047
Bacillota
Ureibacillus chungkukjangi KACC 16626 [QJTJ]
13153
13077
-
Pro
TGG
[ENA]
¡û
>W1810672388
QJTJ01000052
Bacillota
Ureibacillus chungkukjangi KACC 16626 [QJTJ]
9572
9496
-
Pro
TGG
[ENA]
¡û
>W2010432591
FZRJ01000020
Bacillota
Bacillus massiliogabonensis Marseille-P2639 [FZRJ]
523
597
+
Pro
TGG
[ENA]
¡û
>W2010432605
FZRJ01000022
Bacillota
Bacillus massiliogabonensis Marseille-P2639 [FZRJ]
3519
3593
+
Pro
TGG
[ENA]
¡û
>W2010702601
JACHHL010000004
Bacillota
Melissococcus plutonius DSM 29964 [JACHHL]
125
198
+
Pro
TGG
[ENA]
¡û
>W2011011707
NOKQ01000276
Bacillota
Planococcaceae bacterium VT-49 [NOKQ]
1087
1163
+
Pro
TGG
[ENA]
¡û
>W2011156059
OBMQ01000006
Bacillota
Lysinibacillus xyleni JC22 [OBMQ]
902
978
+
Pro
TGG
[ENA]
¡û
>W2011156126
OBMQ01000031
Bacillota
Lysinibacillus xyleni JC22 [OBMQ]
331
255
-
Pro
TGG
[ENA]
¡û
>W2011391117
RBZN01000006
Bacillota
Lysinibacillus endophyticus DSM 100506 [RBZN]
963
1039
+
Pro
TGG
[ENA]
¡û
>W2011485364
RRCT01000033
Bacillota
Lysinibacillus composti MCCC 1A12701 [RRCT]
1283
1359
+
Pro
TGG
[ENA]
¡û
>W2011485379
RRCT01000036
Bacillota
Lysinibacillus composti MCCC 1A12701 [RRCT]
18321
18245
-
Pro
TGG
[ENA]
¡û
>W2011509376
RYYR01000060
Bacillota
Lysinibacillus sp. SYSU K30002 [RYYR]
1038
962
-
Pro
TGG
[ENA]
¡û
>W2011509393
RYYR01000066
Bacillota
Lysinibacillus sp. SYSU K30002 [RYYR]
642
718
+
Pro
TGG
[ENA]
¡û
>W2012088271
VLYA01000071
Bacillota
Lysinibacillus sp. BW-2-10 [VLYA]
178
254
+
Pro
TGG
[ENA]
¡û
>W2012088283
VLYA01000072
Bacillota
Lysinibacillus sp. BW-2-10 [VLYA]
254
178
-
Pro
TGG
[ENA]
¡û
>W2012088291
VLYA01000086
Bacillota
Lysinibacillus sp. BW-2-10 [VLYA]
65580
65504
-
Pro
TGG
[ENA]
¡û
>W2110460685
JAFBDY010000035
Bacillota
Lysinibacillus composti DSM 24785 [JAFBDY]
1308
1384
+
Pro
TGG
[ENA]
¡û
>W2110460700
JAFBDY010000039
Bacillota
Lysinibacillus composti DSM 24785 [JAFBDY]
18296
18220
-
Pro
TGG
[ENA]
¡û
>W2110462527
JAFBFG010000011
Bacillota
Chryseomicrobium aureum DSM 105437 [JAFBFG]
79078
79002
-
Pro
TGG
[ENA]
¡û
>C241004766
AP021885
Bacillota
Melissococcus plutonius DAT1033 [AP021885]
1857864
1857791
-
Pro
TGG
-
¡û
>C11114927
AP012200
Bacillota
Melissococcus plutonius ATCC 35311 [AP012200]
297897
297970
+
Pro
TGG
[Ensembl]
¡û
>W1511316028
JPVN01000064
Bacillota
Ureibacillus manganicus DSM 26584 [JPVN]
90
14
-
Pro
TGG
[ENA]
¡û
>W1511316053
JPVO01000003
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
140
64
-
Pro
TGG
[ENA]
¡û
>W1511316067
JPVO01000006
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
528
604
+
Pro
TGG
[ENA]
¡û
>W1511360950
JSAV01000003
Bacillota
Melissococcus plutonius 764-5B [JSAV]
85
158
+
Pro
TGG
[ENA]
¡û
>W1511361008
JSAW01000002
Bacillota
Melissococcus plutonius B5 [JSAW]
698
771
+
Pro
TGG
[ENA]
¡û
>W1511361043
JSAX01000001
Bacillota
Melissococcus plutonius 765-6B [JSAX]
332422
332495
+
Pro
TGG
[ENA]
¡û
>W1511361169
JSAZ01000006
Bacillota
Melissococcus plutonius 90 [JSAZ]
332512
332585
+
Pro
TGG
[ENA]
¡û
>W1511361174
JSBA01000002
Bacillota
Melissococcus plutonius 49.3 [JSBA]
248
321
+
Pro
TGG
[ENA]
¡û
>W1511361231
JSBB01000002
Bacillota
Melissococcus plutonius 119 [JSBB]
103346
103419
+
Pro
TGG
[ENA]
¡û
>W1511361275
JSBC01000001
Bacillota
Melissococcus plutonius H6 [JSBC]
332151
332224
+
Pro
TGG
[ENA]
¡û
>W1511361323
JSBD01000003
Bacillota
Melissococcus plutonius L9 [JSBD]
698
771
+
Pro
TGG
[ENA]
¡û
>W1511361372
JSBE01000001
Bacillota
Melissococcus plutonius 60 [JSBE]
332152
332225
+
Pro
TGG
[ENA]
¡û
>W1511361399
JSBF01000001
Bacillota
Melissococcus plutonius 82 [JSBF]
332248
332321
+
Pro
TGG
[ENA]
¡û
>C161004020
CP006683
Bacillota
Melissococcus plutonius S1 [CP006683]
297826
297899
+
Pro
TGG
[Ensembl]
¡û
>W1710022957
AVCY01000050
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
528
604
+
Pro
TGG
[ENA]
¡û
>W1710022969
AVCY01000053
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
140
64
-
Pro
TGG
[ENA]
¡û
>W1710023005
AVDA01000064
Bacillota
Ureibacillus manganicus DSM 26584 [AVDA]
90
14
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK