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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161616 (25 seq.)
>W131053693
ANAH01000035
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
84939
84864
-
His
GTG
[ENA]
¡û
>W1711625248
MPIN01000002
Myxococcota
Cystobacter ferrugineus [MPIN]
274175
274250
+
His
GTG
[ENA]
¡û
>W1711628636
MPOI01000010
Myxococcota
Archangium sp. Cb G35 [MPOI]
421344
421270
-
His
GTG
[ENA]
¡û
>C014479
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
2338421
2338494
+
His
GTG
[Ensembl]
¡û
>C181057868
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
9142063
9141989
-
His
GTG
-
¡û
>C191013116
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
2359068
2359142
+
His
GTG
-
¡û
>C191013181
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
2271252
2271326
+
His
GTG
-
¡û
>W141806670
JPMI01000247
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
22274
22200
-
His
GTG
[ENA]
¡û
>W1810452234
PZOX01000021
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
120461
120387
-
His
GTG
[ENA]
¡û
>W1810884676
QUMU01000003
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
526908
526982
+
His
GTG
[ENA]
¡û
>C151083549
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
4084945
4085019
+
His
GTG
[Ensembl]
¡û
>C151091035
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
6215917
6215843
-
His
GTG
[Ensembl]
¡û
>W2010489284
JAAIXZ010000001
Myxococcota
Pyxidicoccus sp. AB060A [JAAIXZ]
49375
49301
-
His
GTG
[ENA]
¡û
>W2010489350
JAAIYA010000008
Myxococcota
Pyxidicoccus sp. CA032A [JAAIYA]
320485
320411
-
His
GTG
[ENA]
¡û
>W2010489458
JAAIYB010000881
Myxococcota
Myxococcus sp. AM301 [JAAIYB]
561
635
+
His
GTG
[ENA]
¡û
>W2010603520
JABJTR010000680
Myxococcota
Pyxidicoccus fallax CA059B [JABJTR]
5713
5787
+
His
GTG
[ENA]
¡û
>W2012066776
VJZZ01000004
Myxococcota
Aggregicoccus sp. 17bor-14 [VJZZ]
372349
372275
-
His
GTG
[ENA]
¡û
>W2110330464
JADKXZ010000004
Myxococcota
Simulacricoccus sp. 17bor-14 [JADKXZ]
372349
372275
-
His
GTG
[ENA]
¡û
>W2110428082
JAEMGR010000034
Myxococcota
Myxococcaceae bacterium JPH2 [JAEMGR]
40120
40046
-
His
GTG
[ENA]
¡û
>W2110692543
JAIQDG010000011
Myxococcota
Myxococcus sp. RHSTA-1-4 [JAIQDG]
160594
160668
+
His
GTG
[ENA]
¡û
>C211258778
CP069338
Myxococcota
Archangium violaceum SDU34 [CP069338]
12323463
12323389
-
His
GTG
-
¡û
>C211259700
CP069396
Myxococcota
Archangium violaceum SDU8 [CP069396]
9515434
9515360
-
His
GTG
-
¡û
>C211277113
CP070500
Myxococcota
Myxococcus xanthus DZ2 [CP070500]
3567215
3567289
+
His
GTG
-
¡û
>C11114309
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4217695
4217769
+
His
GTG
[Ensembl]
¡û
>W1710513717
FNAJ01000009
Myxococcota
Myxococcus virescens [FNAJ]
188226
188300
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK