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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161619 (59 seq.)
>W1710979365
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249341
249265
-
Met
CAT
[ENA]
¡û
>W1711484245
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
32132
32208
+
Met
CAT
[ENA]
¡û
>W1711484249
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
475584
475660
+
Met
CAT
[ENA]
¡û
>W1711484285
MKCO01000015
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
100
176
+
Met
CAT
[ENA]
¡û
>W1711484299
MKCO01000037
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
3
79
+
Met
CAT
[ENA]
¡û
>W1711484304
MKCO01000037
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
530
606
+
Met
CAT
[ENA]
¡û
>C171088973
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2013486
2013410
-
Met
CAT
-
¡û
>C171088977
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2013009
2012933
-
Met
CAT
-
¡û
>C171088985
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1464300
1464224
-
Met
CAT
-
¡û
>WENV180391213
OBPM01042886
[OBPM] marine metagenome; ENVO:00002010
361
285
-
fMet
CAT
[ENA]
¡û
>WENV181224852
OFDG01010451
[OFDG] metagenome; hydrothermal vent
487
411
-
fMet
CAT
[ENA]
¡û
>WENV182577430
OJGE01013762
[OJGE] seawater metagenome; Sea water
478
402
-
fMet
CAT
[ENA]
¡û
>WENV170298389
CESF01108516
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
28723
28647
-
Met
CAT
[ENA]
¡û
>WENV170598247
FUWD010030308
[FUWD] metagenome; unknown
126
202
+
Met
CAT
[ENA]
¡û
>WENV170615395
FUWD012856617
[FUWD] metagenome; unknown
676
600
-
Met
CAT
[ENA]
¡û
>WENV170615397
FUWD012856618
[FUWD] metagenome; unknown
301
225
-
Met
CAT
[ENA]
¡û
>WENV170615400
FUWD012856619
[FUWD] metagenome; unknown
160
84
-
Met
CAT
[ENA]
¡û
>WENV170640670
JFJP01023932
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
132199
132123
-
Met
CAT
[ENA]
¡û
>WENV170704393
LLEK01000009
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
7368
7444
+
Met
CAT
[ENA]
¡û
>WENV170930576
MDTG01169776
[MDTG] marine metagenome; seawater
80
4
-
Met
CAT
[ENA]
¡û
>WENV170931867
MDTG01192678
[MDTG] marine metagenome; seawater
19
95
+
Met
CAT
[ENA]
¡û
>WENV170932949
MDTG01212415
[MDTG] marine metagenome; seawater
17616
17540
-
Met
CAT
[ENA]
¡û
>WENV170942662
MDTG01381888
[MDTG] marine metagenome; seawater
75923
75847
-
Met
CAT
[ENA]
¡û
>W1911200301
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
29932
30008
+
Met
CAT
[ENA]
¡û
>W1911424542
NXGH01000002
Campylobacterota
Arcobacter sp. LMG 9871 [NXGH]
44274
44198
-
Met
CAT
[ENA]
¡û
>W1911424546
NXGH01000002
Campylobacterota
Arcobacter sp. LMG 9871 [NXGH]
43852
43776
-
Met
CAT
[ENA]
¡û
>W1810462546
PZYW01000001
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
638629
638553
-
Met
CAT
[ENA]
¡û
>W1810462550
PZYW01000001
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
196142
196066
-
Met
CAT
[ENA]
¡û
>W1810462597
PZYW01000061
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
95
171
+
Met
CAT
[ENA]
¡û
>W2011048517
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
29932
30008
+
fMet
CAT
[ENA]
¡û
>W2011144224
NXGH01000002
Campylobacterota
Arcobacter sp. LMG 9871 [NXGH]
44274
44198
-
fMet
CAT
[ENA]
¡û
>W2011144228
NXGH01000002
Campylobacterota
Arcobacter sp. LMG 9871 [NXGH]
43852
43776
-
fMet
CAT
[ENA]
¡û
>W2011144265
NXGI01000004
Campylobacterota
Arcobacter sp. LMG 9065 [NXGI]
36706
36782
+
fMet
CAT
[ENA]
¡û
>W2011144269
NXGI01000004
Campylobacterota
Arcobacter sp. LMG 9065 [NXGI]
37128
37204
+
fMet
CAT
[ENA]
¡û
>W2012324535
WFKI01000008
Campylobacterota
Poseidonibacter sp. JOD-M-6 [WFKI]
319
243
-
fMet
CAT
[ENA]
¡û
>W2012324544
WFKI01000010
Campylobacterota
Poseidonibacter sp. JOD-M-6 [WFKI]
74817
74893
+
fMet
CAT
[ENA]
¡û
>W2012324558
WFKI01000038
Campylobacterota
Poseidonibacter sp. JOD-M-6 [WFKI]
497
421
-
fMet
CAT
[ENA]
¡û
>W2012324562
WFKI01000041
Campylobacterota
Poseidonibacter sp. JOD-M-6 [WFKI]
4148
4072
-
fMet
CAT
[ENA]
¡û
>W2012324573
WFKJ01000001
Campylobacterota
Poseidonibacter sp. SJOD-M-5 [WFKJ]
4148
4072
-
fMet
CAT
[ENA]
¡û
>W2012324577
WFKJ01000006
Campylobacterota
Poseidonibacter sp. SJOD-M-5 [WFKJ]
35933
36009
+
fMet
CAT
[ENA]
¡û
>W2012324598
WFKJ01000048
Campylobacterota
Poseidonibacter sp. SJOD-M-5 [WFKJ]
22145
22221
+
fMet
CAT
[ENA]
¡û
>W2012324617
WFKK01000005
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
488
412
-
fMet
CAT
[ENA]
¡û
>W2012324633
WFKK01000045
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
25569
25645
+
fMet
CAT
[ENA]
¡û
>W2012324640
WFKK01000062
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
102
26
-
fMet
CAT
[ENA]
¡û
>W2012324646
WFKK01000127
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
472
396
-
fMet
CAT
[ENA]
¡û
>W2110612943
JAHKQT010000023
Campylobacterota
Poseidonibacter lekithochrous A1R12 [JAHKQT]
125812
125888
+
fMet
CAT
[ENA]
¡û
>W2110612959
JAHKQT010000042
Campylobacterota
Poseidonibacter lekithochrous A1R12 [JAHKQT]
30629
30705
+
fMet
CAT
[ENA]
¡û
>C231428909
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
2275917
2275841
-
fMet
CAT
-
¡û
>C241068401
CP042652
Campylobacterota
Arcobacter acticola KCTC 52212 [CP042652]
2381220
2381144
-
fMet
CAT
-
¡û
>C241068405
CP042652
Campylobacterota
Arcobacter acticola KCTC 52212 [CP042652]
2380756
2380680
-
fMet
CAT
-
¡û
>C241068412
CP042652
Campylobacterota
Arcobacter acticola KCTC 52212 [CP042652]
1507133
1507057
-
fMet
CAT
-
¡û
>C241161756
CP053840
Campylobacterota
Arcobacter venerupis LMG 26156 [CP053840]
2516480
2516404
-
fMet
CAT
-
¡û
>C241165607
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
2724321
2724245
-
fMet
CAT
-
¡û
>C241165612
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
2723793
2723717
-
fMet
CAT
-
¡û
>C241165613
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
2723693
2723617
-
fMet
CAT
-
¡û
>C241165622
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
2375666
2375590
-
fMet
CAT
-
¡û
>C241165626
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
1932214
1932138
-
fMet
CAT
-
¡û
>W1511327898
JQIR01000099
Campylobacterota
Sulfurovum sp. FS06-10 [JQIR]
8014
7938
-
Met
CAT
[ENA]
¡û
>W1610835356
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249341
249265
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK