This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161691 (38 seq.)
>W1710796668
LJSH01000004
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
384257
384181
-
Met
CAT
[ENA]
¡û
>W1711174232
LWEA01000008
Alphaproteobacteria
Brucella intermedia intermedium [LWEA]
150992
151068
+
Met
CAT
[ENA]
¡û
>w018749
AATP01000001
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
980200
980276
+
Met
CAT
[ENA]
¡û
>WENV181233537
OFET01000003
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
166291
166367
+
Ile2
CAT
[ENA]
¡û
>WENV181234194
OFEU01000003
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
32765
32841
+
Ile2
CAT
[ENA]
¡û
>WENV170962596
MRWF01021175
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
3418
3342
-
Met
CAT
[ENA]
¡û
>WENV170963213
MRWG01000043
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
83287
83211
-
Met
CAT
[ENA]
¡û
>WENV170964238
MRWG01005713
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
3231
3155
-
Met
CAT
[ENA]
¡û
>WENV170964529
MRWG01016391
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
682
758
+
Met
CAT
[ENA]
¡û
>WENV170993813
MWWC01008828
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
183
259
+
Met
CAT
[ENA]
¡û
>C191015710
CP018911
Alphaproteobacteria
Glycocaulis alkaliphilus 6B-8 [CP018911]
609814
609738
-
Met
CAT
-
¡û
>C191015711
CP018911
Alphaproteobacteria
Glycocaulis alkaliphilus 6B-8 [CP018911]
533200
533124
-
Met
CAT
-
¡û
>W141804411
JPHU01000001
Alphaproteobacteria
Parvularcula oceani [JPHU]
107256
107332
+
Met
CAT
[ENA]
¡û
>W141820615
JQMZ01000001
Alphaproteobacteria
Oceanicaulis sp. HL-87 [JQMZ]
914429
914353
-
Met
CAT
[ENA]
¡û
>W1810493395
QBDX01000001
Alphaproteobacteria
Hyphobacterium indicum 2ED5 [QBDX]
639954
640030
+
Met
CAT
[ENA]
¡û
>W1810583938
QEXV01000003
Alphaproteobacteria
Marinicauda salina WD6-1 [QEXV]
744688
744612
-
Met
CAT
[ENA]
¡û
>W2010645408
JABXOG010000003
Alphaproteobacteria
Ochrobactrum intermedium 045999 [JABXOG]
231612
231536
-
Ile2
CAT
[ENA]
¡û
>W2010692316
JACGXG010000001
Alphaproteobacteria
Ochrobactrum intermedium RH4WT92 [JACGXG]
223145
223221
+
Ile2
CAT
[ENA]
¡û
>W2010782471
LNFN01000011
Alphaproteobacteria
Marinicauda pacifica P-1 km-3 [LNFN]
414221
414297
+
Ile2
CAT
[ENA]
¡û
>W2011274316
QLZD01000043
Alphaproteobacteria
Candidatus Tokpelaia sp. RhiAcro1 [QLZD]
23758
23834
+
Ile2
CAT
[ENA]
¡û
>W2011685947
SRXV01000001
Alphaproteobacteria
Marinicauda pacifica P-1 km-3 [SRXV]
516390
516466
+
Ile2
CAT
[ENA]
¡û
>W2011685989
SRXW01000001
Alphaproteobacteria
Marinicauda algicola JCM 31718 [SRXW]
294584
294508
-
Ile2
CAT
[ENA]
¡û
>W2011973856
VCJR02000001
Alphaproteobacteria
Parvularcula flava NH6-79 [VCJR]
624823
624747
-
Ile2
CAT
[ENA]
¡û
>W2012031692
VHLH01000006
Alphaproteobacteria
Pararhizobium sp. BGMRC6574 [VHLH]
23660
23584
-
Ile2
CAT
[ENA]
¡û
>W2110021219
BMEI01000001
Alphaproteobacteria
Marinicauda pacifica CGMCC 1.11031 [BMEI]
516372
516448
+
Ile2
CAT
[ENA]
¡û
>W2110022178
BMFB01000002
Alphaproteobacteria
Glycocaulis alkaliphilus CGMCC 1.12428 [BMFB]
211536
211460
-
Ile2
CAT
[ENA]
¡û
>W2110022179
BMFB01000002
Alphaproteobacteria
Glycocaulis alkaliphilus CGMCC 1.12428 [BMFB]
134921
134845
-
Ile2
CAT
[ENA]
¡û
>W2110023788
BMGH01000001
Alphaproteobacteria
Aquisalinus flavus CGMCC 1.12921 [BMGH]
423466
423390
-
Ile2
CAT
[ENA]
¡û
>W2110024565
BMGZ01000001
Alphaproteobacteria
Parvularcula flava CGMCC 1.14984 [BMGZ]
625003
624927
-
Ile2
CAT
[ENA]
¡û
>W2110275968
JACVVO010000002
Alphaproteobacteria
Aquisalinus flavus D11M-2 [JACVVO]
423673
423597
-
Ile2
CAT
[ENA]
¡û
>W2110296721
JADAJB010000007
Alphaproteobacteria
Ochrobactrum sp. Res13-Abat-PEA25-P4-02 [JADAJB]
232508
232432
-
Ile2
CAT
[ENA]
¡û
>C211117370
CP058669
Alphaproteobacteria
Hyphobacterium sp. CCMP332 [CP058669]
394699
394775
+
Ile2
CAT
-
¡û
>C211283659
CP071057
Alphaproteobacteria
Marinicauda algicola RMAR8-3 [CP071057]
418332
418408
+
Ile2
CAT
-
¡û
>C241246219
CP123056
Alphaproteobacteria
Brucella intermedia TSBOI [CP123056, CP123057]
1668519
1668443
-
Ile2
CAT
-
¡û
>C241300618
CP132334
Alphaproteobacteria
Parvularcula sp. IMCC14364 [CP132334]
1647399
1647475
+
Ile2
CAT
-
¡û
>W1610056804
BBWO01000004
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
154090
154166
+
Met
CAT
[ENA]
¡û
>W1610660625
LJSH01000004
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
384257
384181
-
Met
CAT
[ENA]
¡û
>W1710053503
BBWO01000004
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
154090
154166
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK