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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161705 (110 seq.)
>W1710799362
LJUP01000361
Bacteroidota
Bacteroides sp. SM23_62 [LJUP]
3148
3223
+
His
GTG
[ENA]
¡û
>W1711223953
LXTR01000038
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
310413
310337
-
His
GTG
[ENA]
¡û
>W1711392260
MENJ01000096
Bacteroidota
Bacteroidetes bacterium GWA2_42_15 [MENJ]
104559
104485
-
His
GTG
[ENA]
¡û
>W1711393406
MEOO01000048
Bacteroidota
Bacteroidetes bacterium GWF2_42_66 [MEOO]
104631
104557
-
His
GTG
[ENA]
¡û
>W131046221
AMSG01000005
Bacteroidota
Galbibacter marinus ck-I2-15 [AMSG]
60058
59983
-
His
GTG
[ENA]
¡û
>W131180522
ARNE01000002
Bacteroidota
Eudoraea adriatica DSM 19308 [ARNE]
69546
69620
+
His
GTG
[ENA]
¡û
>W131223440
AUCB01000008
Bacteroidota
Arenibacter certesii DSM 19833 [AUCB]
119651
119576
-
His
GTG
[ENA]
¡û
>W131233860
AUKI01000011
Bacteroidota
Salinimicrobium terrae DSM 17865 [AUKI]
200694
200620
-
His
GTG
[ENA]
¡û
>W131234648
AUKX01000047
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
517
442
-
His
GTG
[ENA]
¡û
>W1711711563
MTAZ01000049
Bacteroidota
Arenibacter amylolyticus AK53 [MTAZ]
50024
50099
+
His
GTG
[ENA]
¡û
>W1712070421
NGNR01000002
Bacteroidota
Robiginitalea sediminis O458 [NGNR]
351845
351921
+
His
GTG
[ENA]
¡û
>C171046699
CP016269
Bacteroidota
Flavobacteriaceae bacterium UJ101 [CP016269]
592483
592558
+
His
GTG
-
¡û
>w014320
AAOI01000002
Bacteroidota
Robiginitalea biformata HTCC2501 [AAOI]
304888
304810
-
His
GTG
[ENA]
¡û
>WENV180294536
OBIY01225270
[OBIY] beach sand metagenome; beach sand
142
67
-
His
GTG
[ENA]
¡û
>WENV180399091
OBQE01046860
[OBQE] marine metagenome; ENVO.00002150
312
236
-
His
GTG
[ENA]
¡û
>WENV180592370
OCOW01002405
[OCOW] marine metagenome; Sterivex cartridges
73
-1
-
His
GTG
[ENA]
¡û
>WENV181412391
OGCK01000086
[OGCK] hot springs metagenome; hot spring sediment
1120
1045
-
His
GTG
[ENA]
¡û
>W141200469
AYXY01000013
Bacteroidota
Zhouia amylolytica AD3 [AYXY]
162585
162661
+
His
GTG
[ENA]
¡û
>WENV183704024
PDWI01000002
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
51211
51286
+
His
GTG
[ENA]
¡û
>WENV183716810
PDWJ01000203
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
97847
97922
+
His
GTG
[ENA]
¡û
>WENV170220126
CEPZ01088426
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
177249
177324
+
His
GTG
[ENA]
¡û
>WENV170303626
CESH01403516
[CESH] marine metagenome genome assembly TARA_094_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
105
180
+
His
GTG
[ENA]
¡û
>WENV170414479
CEUK01229615
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
289
215
-
His
GTG
[ENA]
¡û
>WENV170470108
CEVF01154716
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1817
1743
-
His
GTG
[ENA]
¡û
>WENV170963295
MRWG01000083
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
187150
187224
+
His
GTG
[ENA]
¡û
>WENV170963768
MRWG01000703
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
5121
5197
+
His
GTG
[ENA]
¡û
>C181145105
CP027062
Bacteroidota
Pukyongia salina RR4-38 [CP027062]
2394531
2394606
+
His
GTG
-
¡û
>C181196424
CP031153
Bacteroidota
Kordia sp. SMS9 [CP031153]
3220120
3220195
+
His
GTG
-
¡û
>W141821168
JQNJ01000001
Bacteroidota
Muricauda sp. MAR_2010_75 [JQNJ]
3491754
3491829
+
His
GTG
[ENA]
¡û
>W1910569170
JJMP01000006
Bacteroidota
Muricauda olearia Th120 [JJMP]
178079
178004
-
His
GTG
[ENA]
¡û
>W1910693572
MDGL01000160
Bacteroidota
Maribacter sp. 4G9 [MDGL]
66644
66720
+
His
GTG
[ENA]
¡û
>W1910857461
NBWU01000004
Bacteroidota
Sediminicola luteus HQA918 [NBWU]
626403
626328
-
His
GTG
[ENA]
¡û
>W1911696625
QMEM01000001
Bacteroidota
Lewinella sp. IMCC34183 [QMEM]
340651
340728
+
His
GTG
[ENA]
¡û
>W1911698453
QNQZ01000001
Bacteroidota
Lewinella sp. IMCC34191 [QNQZ]
790256
790181
-
His
GTG
[ENA]
¡û
>W1911740794
QUSX01000002
Bacteroidota
Maribacter sp. PoM-212 [QUSX]
769195
769120
-
His
GTG
[ENA]
¡û
>W1810059785
PDLO01000001
Bacteroidota
Neolewinella marina MKG-38 [PDLO]
122232
122307
+
His
GTG
[ENA]
¡û
>WENV027307
AACY021034722
Marine microbial communities from Global Ocean Sampling (GOS)
942
864
-
His
GTG
[ENA]
>W1810504271
QBKT01000003
Bacteroidota
Kordia periserrulae DSM 25731 [QBKT]
338997
339072
+
His
GTG
[ENA]
¡û
>W1810513761
QBTW01000001
Bacteroidota
Muricauda brasiliensis K001 [QBTW]
56502
56427
-
His
GTG
[ENA]
¡û
>W1810596588
QGGQ01000012
Bacteroidota
Maribacter polysiphoniae DSM 23514 [QGGQ]
135386
135311
-
His
GTG
[ENA]
¡û
>W1810659338
QJJZ01000011
Bacteroidota
Arenibacter sp. ARW7G5Y1 [QJJZ]
46982
46907
-
His
GTG
[ENA]
¡û
>W1810787205
QRDN01000003
Bacteroidota
Muricauda sp. ARW7G5W [QRDN]
206077
206002
-
His
GTG
[ENA]
¡û
>W1810858627
QTJX01000001
Bacteroidota
Allomuricauda nanhaiensis SM1704 [QTJX]
1390168
1390093
-
His
GTG
[ENA]
¡û
>W1810914337
QVON01000002
Bacteroidota
Arenibacter sp. P308M17 [QVON]
104547
104622
+
His
GTG
[ENA]
¡û
>W2010415463
FXTB01000009
Bacteroidota
Saccharicrinis carchari DSM 27040 [FXTB]
40807
40732
-
His
GTG
[ENA]
¡û
>W2010445970
JAABOO010000002
Bacteroidota
Leptobacterium flavescens KCTC 22160 [JAABOO]
826277
826202
-
His
GTG
[ENA]
¡û
>W2010578344
JAAXCQ010000009
Bacteroidota
Arenibacter sp. 6A1 [JAAXCQ]
44935
45010
+
His
GTG
[ENA]
¡û
>W2010578345
JAAXCQ010000009
Bacteroidota
Arenibacter sp. 6A1 [JAAXCQ]
45533
45608
+
His
GTG
[ENA]
¡û
>W2010752120
JACLZF010000002
Bacteroidota
Robiginitalea sp. SC105 [JACLZF]
1057385
1057310
-
His
GTG
[ENA]
¡û
>W2010754903
JJMP01000006
Bacteroidota
Muricauda olearia Th120 [JJMP]
178079
178004
-
His
GTG
[ENA]
¡û
>W2010827386
MDGL01000160
Bacteroidota
Maribacter sp. 4G9 [MDGL]
66644
66720
+
His
GTG
[ENA]
¡û
>W2010936200
NBWU01000004
Bacteroidota
Sediminicola luteus HQA918 [NBWU]
626403
626328
-
His
GTG
[ENA]
¡û
>W2011267460
QKWN01000010
Bacteroidota
Robertkochia sp. CL23 [QKWN]
214553
214478
-
His
GTG
[ENA]
¡û
>W2011276290
QMEM01000001
Bacteroidota
Lewinella sp. IMCC34183 [QMEM]
340651
340728
+
His
GTG
[ENA]
¡û
>W2011277236
QNQZ01000001
Bacteroidota
Lewinella sp. IMCC34191 [QNQZ]
790256
790181
-
His
GTG
[ENA]
¡û
>W2011306242
QUSX01000002
Bacteroidota
Maribacter sp. PoM-212 [QUSX]
769195
769120
-
His
GTG
[ENA]
¡û
>W2011328923
QXMP01000005
Bacteroidota
Robertkochia marina CC-AMO-30D [QXMP]
91114
91039
-
His
GTG
[ENA]
¡û
>W2011368863
RBCJ01000002
Bacteroidota
Pseudozobellia sp. CCMM003 [RBCJ]
171188
171263
+
His
GTG
[ENA]
¡û
>W2011479260
RQPJ01000021
Bacteroidota
Arenibacter sp. GUO666 [RQPJ]
665867
665792
-
His
GTG
[ENA]
¡û
>W2011512815
RZNA01000049
Bacteroidota
Muricauda sp. 40DY170 [RZNA]
73394
73319
-
His
GTG
[ENA]
¡û
>W2011638516
SMNH02000002
Bacteroidota
Kordia sp. TARA_039_SRF [SMNH]
203615
203540
-
His
GTG
[ENA]
¡û
>W2011645419
SNTZ01000014
Bacteroidota
Muricauda sp. SCR12 [SNTZ]
59350
59425
+
His
GTG
[ENA]
¡û
>W2011650485
SNYI01000002
Bacteroidota
Zeaxanthinibacter enoshimensis DSM 18435 [SNYI]
782648
782723
+
His
GTG
[ENA]
¡û
>W2011680876
SRSF01000001
Bacteroidota
Lewinella sp. HSMS-39 [SRSF]
609651
609727
+
His
GTG
[ENA]
¡û
>W2011686028
SRXX01000002
Bacteroidota
Flagellimonas sp. XY-359 [SRXX]
226124
226049
-
His
GTG
[ENA]
¡û
>W2011690601
SSMC01000002
Bacteroidota
Robertkochia marina CC-AMO-30D [SSMC]
276372
276447
+
His
GTG
[ENA]
¡û
>W2011966854
VBUK01000004
Bacteroidota
Maripseudobacter aurantiacus KCTC 52409 [VBUK]
94788
94863
+
His
GTG
[ENA]
¡û
>W2011973284
VCHY01000002
Bacteroidota
Labilibacter sp. CG51 [VCHY]
369165
369240
+
His
GTG
[ENA]
¡û
>W2011977326
VCNI01000001
Bacteroidota
Flagellimonas sp. AsT0115 [VCNI]
392155
392230
+
His
GTG
[ENA]
¡û
>W2012156670
VUOE01000002
Bacteroidota
Maribacter flavus KCTC 42508 [VUOE]
902196
902121
-
His
GTG
[ENA]
¡û
>W2012157094
VVIN01000010
Bacteroidota
Arenibacter sp. JC631 [VVIN]
39477
39402
-
His
GTG
[ENA]
¡û
>W2012311158
WELG01000001
Bacteroidota
Muricauda olearia CL-SS4 [WELG]
815623
815698
+
His
GTG
[ENA]
¡û
>W2012357182
WKJH01000004
Bacteroidota
Maribacter luteus RZ05 [WKJH]
29158
29233
+
His
GTG
[ENA]
¡û
>W2012441990
WUEG01000010
Bacteroidota
Muricauda sp. TY007 [WUEG]
106008
106083
+
His
GTG
[ENA]
¡û
>W2012509827
WXYO01000006
Bacteroidota
Flavobacteriaceae bacterium R33 [WXYO]
98740
98816
+
His
GTG
[ENA]
¡û
>W2012510508
WYET01000007
Bacteroidota
Muricauda sp. HICW [WYET]
54833
54758
-
His
GTG
[ENA]
¡û
>W2110046624
BMWP01000009
Bacteroidota
Arenibacter certesii KCTC 12113 [BMWP]
47397
47472
+
His
GTG
[ENA]
¡û
>W2110181307
JABTCG010000001
Bacteroidota
Maribacter arenosus CAU 1321 [JABTCG]
375749
375824
+
His
GTG
[ENA]
¡û
>W2110269052
JACVDC010000068
Bacteroidota
Sinomicrobium sp. FJxs [JACVDC]
20695
20620
-
His
GTG
[ENA]
¡û
>W2110281020
JACWLN010000011
Bacteroidota
Maribacter polysiphoniae KCTC 22021 [JACWLN]
136294
136219
-
His
GTG
[ENA]
¡û
>W2110337498
JADMKT010000077
Bacteroidota
Robertkochia sp. 1368 [JADMKT]
125814
125889
+
His
GTG
[ENA]
¡û
>W2110404878
JAECMS010000007
Bacteroidota
Galbibacter sp. A3-108 [JAECMS]
18588
18513
-
His
GTG
[ENA]
¡û
>W2110435848
JAENRR010000014
Bacteroidota
Carboxylicivirga sp. N1Y132 [JAENRR]
6922
6846
-
His
GTG
[ENA]
¡û
>W2110511613
JAFLND010000001
Bacteroidota
Muricauda sp. CAU 1631 [JAFLND]
1273781
1273706
-
His
GTG
[ENA]
¡û
>W2110511661
JAFLNE010000004
Bacteroidota
Muricauda sp. CAU 1633 [JAFLNE]
408853
408778
-
His
GTG
[ENA]
¡û
>W2110511835
JAFLNM010000001
Bacteroidota
Muricauda lutimaris BC31-3-A3 [JAFLNM]
869173
869248
+
His
GTG
[ENA]
¡û
>W2110556974
JAGJEC010000002
Bacteroidota
Maribacter sp. MMG018 [JAGJEC]
909294
909219
-
His
GTG
[ENA]
¡û
>W2110690176
JAINZS010000005
Bacteroidota
Robertkochia sp. 3YJGBD-33 [JAINZS]
25314
25239
-
His
GTG
[ENA]
¡û
>W2110690222
JAINZT010000007
Bacteroidota
Robertkochia marina 3YJGBD-35 [JAINZT]
302355
302430
+
His
GTG
[ENA]
¡û
>W2110701689
JAIVAA010000005
Bacteroidota
Muricauda ruestringensis AmN21-2 [JAIVAA]
261939
262014
+
His
GTG
[ENA]
¡û
>C231289129
CP091037
Bacteroidota
Muricauda sp. SCSIO 65647 [CP091037]
3238256
3238331
+
His
GTG
-
¡û
>C231316169
CP092415
Bacteroidota
Muricauda aquimarina SCSIO W0262 [CP092415]
3296907
3296982
+
His
GTG
-
¡û
>C231342888
CP094326
Bacteroidota
Zhouia spongiae HN-Y44 [CP094326]
2760913
2760988
+
His
GTG
-
¡û
>C231564975
CP115159
Bacteroidota
Zunongwangia sp. HGR-M22 [CP115159]
2668221
2668146
-
His
GTG
-
¡û
>C231565037
CP115161
Bacteroidota
Zunongwangia sp. HRR-M8 [CP115161]
1393975
1394050
+
His
GTG
-
¡û
>C241010609
AP027268
Bacteroidota
Flagellimonas marinaquae IFOP_LL357 [AP027268]
3136371
3136446
+
His
GTG
-
¡û
>W2310027129
BSQF01000003
Bacteroidota
Muricauda sp. NBRC 101325 [BSQF]
203397
203472
+
His
GTG
[ENA]
¡û
>C10110581
CP001712
Bacteroidota
Robiginitalea biformata HTCC2501 [CP001712]
2350213
2350137
-
His
GTG
[Ensembl]
¡û
>W1511594941
LBMG01000033
Bacteroidota
Kordia jejudonensis SSK3-3 [LBMG]
69413
69487
+
His
GTG
[ENA]
¡û
>W1511627028
LDAS01000001
Bacteroidota
Maribacter thermophilus HT7-2 [LDAS]
1060893
1060818
-
His
GTG
[ENA]
¡û
>W1610663319
LJUP01000361
Bacteroidota
Bacteroides sp. SM23_62 [LJUP]
3148
3223
+
His
GTG
[ENA]
¡û
>W1611008324
LXTR01000038
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
310413
310337
-
His
GTG
[ENA]
¡û
>W1710526453
FNKI01000002
Bacteroidota
Allomuricauda zhangzhouensis [FNKI]
1377020
1376946
-
His
GTG
[ENA]
¡û
>W1710528117
FNMY01000001
Bacteroidota
Allomuricauda zhangzhouensis [FNMY]
1377063
1376989
-
His
GTG
[ENA]
¡û
>W1710574939
FOYQ01000002
Bacteroidota
Robiginitalea myxolifaciens [FOYQ]
418649
418574
-
His
GTG
[ENA]
¡û
>W1710576787
FPAG01000005
Bacteroidota
Zhouia amylolytica [FPAG]
336312
336388
+
His
GTG
[ENA]
¡û
>W1710583570
FQUX01000002
Bacteroidota
Arenibacter palladensis [FQUX]
83815
83890
+
His
GTG
[ENA]
¡û
>W1710587917
FQYX01000029
Bacteroidota
Arenibacter nanhaiticus [FQYX]
48088
48163
+
His
GTG
[ENA]
¡û
>W1710587918
FQYX01000029
Bacteroidota
Arenibacter nanhaiticus [FQYX]
48688
48763
+
His
GTG
[ENA]
¡û
>W1710608041
FXAO01000008
Bacteroidota
Arenibacter troitsensis [FXAO]
130477
130552
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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