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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161901 (99 seq.)
>W1711463079
MJII01000001
Bacillota
Intestinimonas butyriciproducens [MJII]
1633323
1633247
-
Arg
TCT
[ENA]
¡û
>C171010400
CP011307
Bacillota
Intestinimonas butyriciproducens AF211 [CP011307]
2542758
2542682
-
Arg
TCT
-
¡û
>WENV180224423
OBBJ01053227
[OBBJ] human gut metagenome; human gut
123
199
+
Arg
TCT
[ENA]
¡û
>WENV180423982
OBVW01052046
[OBVW] human gut metagenome; faeces
120
44
-
Arg
TCT
[ENA]
¡û
>WENV180434956
OBWL01002518
[OBWL] human gut metagenome; faeces
1790
1714
-
Arg
TCT
[ENA]
¡û
>WENV180540449
OCHQ01041476
[OCHQ] human gut metagenome; human gut
383
307
-
Arg
TCT
[ENA]
¡û
>WENV180543556
OCHT01186486
[OCHT] human gut metagenome; human gut
167
91
-
Arg
TCT
[ENA]
¡û
>WENV180562765
OCLB01085105
[OCLB] human gut metagenome; human gut
34
110
+
Arg
TCT
[ENA]
¡û
>WENV180626242
OCQL01269559
[OCQL] human gut metagenome; human gut
106
182
+
Arg
TCT
[ENA]
¡û
>WENV180626979
OCQM01081399
[OCQM] human gut metagenome; human gut
131
207
+
Arg
TCT
[ENA]
¡û
>WENV180743286
ODHH01211156
[ODHH] human metagenome; G_DNA_Stool
64
140
+
Arg
TCT
[ENA]
¡û
>WENV180919158
ODTG01022310
[ODTG] human metagenome; G_DNA_Stool
441
365
-
Arg
TCT
[ENA]
¡û
>WENV181136768
OEGI01053815
[OEGI] human metagenome; G_DNA_Supragingival plaque
120
44
-
Arg
TCT
[ENA]
¡û
>WENV181343528
OFMJ01002895
[OFMJ] human gut metagenome; human gut
7
83
+
Arg
TCT
[ENA]
¡û
>WENV181366923
OFPS01034000
[OFPS] human gut metagenome; human gut
217
141
-
Arg
TCT
[ENA]
¡û
>WENV181463269
OGEO01001240
[OGEO] metagenome; Human gut stool
15885
15961
+
Arg
TCT
[ENA]
¡û
>WENV181505113
OGGK01003813
[OGGK] metagenome; Human gut stool
6213
6137
-
Arg
TCT
[ENA]
¡û
>WENV181508540
OGGQ01000787
[OGGQ] metagenome; Human gut stool
42282
42358
+
Arg
TCT
[ENA]
¡û
>WENV181534476
OGHT01003342
[OGHT] metagenome; Human gut stool
1595
1671
+
Arg
TCT
[ENA]
¡û
>WENV181568461
OGJK01002389
[OGJK] metagenome; Human gut stool
11315
11239
-
Arg
TCT
[ENA]
¡û
>WENV181571253
OGJO01007892
[OGJO] metagenome; Human gut stool
677
601
-
Arg
TCT
[ENA]
¡û
>WENV181575206
OGJU01000827
[OGJU] metagenome; Human gut stool
6099
6175
+
Arg
TCT
[ENA]
¡û
>WENV181584655
OGKE01004895
[OGKE] metagenome; Human gut stool
703
627
-
Arg
TCT
[ENA]
¡û
>WENV181605226
OGLJ01002660
[OGLJ] metagenome; Human gut stool
3387
3311
-
Arg
TCT
[ENA]
¡û
>WENV181648763
OGNR01001827
[OGNR] metagenome; Human gut stool
7223
7299
+
Arg
TCT
[ENA]
¡û
>WENV181915548
OGYF01009561
[OGYF] human gut metagenome; faeces
51
124
+
Arg
TCT
[ENA]
¡û
>WENV181926129
OGYM01033004
[OGYM] human gut metagenome; faeces
1229
1302
+
Arg
TCT
[ENA]
¡û
>WENV182002862
OHBA01022333
[OHBA] human gut metagenome; feces
122
46
-
Arg
TCT
[ENA]
¡û
>WENV182025443
OHCI01004853
[OHCI] human gut metagenome; feces
620
544
-
Arg
TCT
[ENA]
¡û
>WENV182190346
OHOP01017096
[OHOP] human gut metagenome; feces
850
926
+
Arg
TCT
[ENA]
¡û
>WENV182330605
OHZG01005227
[OHZG] human gut metagenome; feces
205
129
-
Arg
TCT
[ENA]
¡û
>WENV182349663
OIBC01007217
[OIBC] human gut metagenome; feces
94
18
-
Arg
TCT
[ENA]
¡û
>WENV182410622
OIFL01009336
[OIFL] human gut metagenome; human gut
399
475
+
Ser
GCT
[ENA]
¡û
>WENV182435662
OIJD01010020
[OIJD] human gut metagenome; human gut
16
92
+
Arg
TCT
[ENA]
¡û
>WENV182467734
OIOV01027089
[OIOV] human gut metagenome; human gut
167
91
-
Arg
TCT
[ENA]
¡û
>WENV182521046
OIWQ01004175
[OIWQ] human gut metagenome; faeces
3375
3299
-
Arg
TCT
[ENA]
¡û
>WENV182532392
OIXA01001908
[OIXA] human gut metagenome; faeces
16636
16560
-
Arg
TCT
[ENA]
¡û
>WENV182611115
OJJW01017619
[OJJW] metagenome; faeces
623
547
-
Arg
TCT
[ENA]
¡û
>WENV182622169
OJKJ01008559
[OJKJ] metagenome; faeces
208
284
+
Arg
TCT
[ENA]
¡û
>WENV182637761
OJLA01003685
[OJLA] metagenome; faeces
8017
8093
+
Arg
TCT
[ENA]
¡û
>WENV182638829
OJLA01026543
[OJLA] metagenome; faeces
336
412
+
Arg
TCT
[ENA]
¡û
>WENV182680913
OJNU01022762
[OJNU] human gut metagenome; human gut
21
97
+
Arg
TCT
[ENA]
¡û
>WENV182698304
OJOM01002681
[OJOM] human gut metagenome; stool sample
323
247
-
Arg
TCT
[ENA]
¡û
>WENV182708158
OJOZ01003120
[OJOZ] human gut metagenome; stool sample
239
315
+
Arg
TCT
[ENA]
¡û
>WENV182745121
OJQS01022507
[OJQS] human gut metagenome; stool sample
138
62
-
Arg
TCT
[ENA]
¡û
>WENV182752780
OJRC01000016
[OJRC] human gut metagenome; stool sample
101318
101394
+
Arg
TCT
[ENA]
¡û
>WENV182777433
OJSC01001898
[OJSC] human gut metagenome; human gut
18832
18756
-
Arg
TCT
[ENA]
¡û
>WENV182781075
OJSE01001594
[OJSE] human gut metagenome; human gut
2054
1978
-
Arg
TCT
[ENA]
¡û
>WENV182795543
OJSQ01001024
[OJSQ] human gut metagenome; human gut
28527
28603
+
Arg
TCT
[ENA]
¡û
>WENV182801556
OJUG01001162
[OJUG] human gut metagenome; human gut
6532
6456
-
Arg
TCT
[ENA]
¡û
>WENV182883322
OKSB01006911
[OKSB] human gut metagenome; faeces
543
467
-
Arg
TCT
[ENA]
¡û
>WENV182904190
OKSZ01037949
[OKSZ] human gut metagenome; feces
422
498
+
Arg
TCT
[ENA]
¡û
>WENV182937508
OKVC01007928
[OKVC] human gut metagenome; feces
880
804
-
Arg
TCT
[ENA]
¡û
>WENV182958530
OKWH01018127
[OKWH] human gut metagenome; human gut
398
474
+
Arg
TCT
[ENA]
¡û
>WENV182990850
OLAN01014876
[OLAN] human gut metagenome; human gut
717
793
+
Arg
TCT
[ENA]
¡û
>WENV183031791
OLFX01012840
[OLFX] human gut metagenome; faeces
1098
1022
-
Arg
TCT
[ENA]
¡û
>WENV183033098
OLFY01001561
[OLFY] human gut metagenome; faeces
10387
10311
-
Arg
TCT
[ENA]
¡û
>WENV183049635
OLGH01012870
[OLGH] human gut metagenome; faeces
966
890
-
Arg
TCT
[ENA]
¡û
>WENV183089025
OLJW01001620
[OLJW] human gut metagenome; human gut
4729
4653
-
Arg
TCT
[ENA]
¡û
>WENV183114909
OLNQ01002346
[OLNQ] human gut metagenome; faeces
15290
15366
+
Arg
TCT
[ENA]
¡û
>WENV183229275
OLQS01000460
[OLQS] human gut metagenome; faeces
109
33
-
Arg
TCT
[ENA]
¡û
>WENV183265105
OLRS01001998
[OLRS] human gut metagenome; faeces
6541
6465
-
Arg
TCT
[ENA]
¡û
>WENV183364090
OLXM01001101
[OLXM] human gut metagenome; feces
6400
6324
-
Arg
TCT
[ENA]
¡û
>WENV183377227
OLYB01009379
[OLYB] human gut metagenome; feces
921
845
-
Arg
TCT
[ENA]
¡û
>WENV183493019
OMGI01003928
[OMGI] human gut metagenome; human gut
2241
2165
-
Arg
TCT
[ENA]
¡û
>WENV183495815
OMGL01014829
[OMGL] human gut metagenome; human gut
1682
1606
-
Arg
TCT
[ENA]
¡û
>WENV183567665
OOCB01000783
[OOCB] human gut metagenome; human gut
32078
32154
+
Arg
TCT
[ENA]
¡û
>WENV183583303
OOCP01018965
[OOCP] human gut metagenome; human gut
210
134
-
Arg
TCT
[ENA]
¡û
>WENV183597750
OODF01003857
[OODF] human gut metagenome; human gut
3997
4072
+
Arg
TCT
[ENA]
¡û
>WENV183646247
OQVR01000672
[OQVR] human gut metagenome; human gut
14464
14540
+
Arg
TCT
[ENA]
¡û
>WENV183653548
OQVZ01046762
[OQVZ] human gut metagenome; human gut
597
673
+
Arg
TCT
[ENA]
¡û
>WENV183659103
OQWM01012435
[OQWM] human gut metagenome; human gut
3387
3311
-
Arg
TCT
[ENA]
¡û
>WENV183762059
PPYE01272794
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
825
901
+
Arg
TCT
[ENA]
¡û
>WENV183779731
PPYF01149338
[PPYF] human gut metagenome; stool from patient with Crohn's disease
29
105
+
Arg
TCT
[ENA]
¡û
>WENV170062707
CDZJ01023875
[CDZJ] gut metagenome; human stools
53399
53475
+
Arg
TCT
[ENA]
¡û
>WENV170067011
CDZN01023500
[CDZN] gut metagenome; human stools
914
990
+
Arg
TCT
[ENA]
¡û
>WENV170069714
CDZQ01001398
[CDZQ] gut metagenome; human stools
101921
101845
-
Arg
TCT
[ENA]
¡û
>WENV170096389
CEAK01015028
[CEAK] gut metagenome; human stools
1096
1020
-
Arg
TCT
[ENA]
¡û
>C191008847
CP011524
Bacillota
Intestinimonas butyriciproducens SRB-521-5-I [CP011524]
2492123
2492047
-
Arg
TCT
-
¡û
>W1810572976
QEKK01000005
Bacillota
Intestinimonas butyriciproducens DSM 26588 [QEKK]
52733
52657
-
Arg
TCT
[ENA]
¡û
>W2010328617
CACWCR010000076
Bacillota
Ruminococcaceae bacterium [CACWCR]
4966
4892
-
Arg
TCT
[ENA]
¡û
>W2010334861
CACYFU010000148
Bacillota
Ruminococcaceae bacterium [CACYFU]
4893
4819
-
Arg
TCT
[ENA]
¡û
>W2010335321
CACYLC010000002
Bacillota
Ruminococcaceae bacterium [CACYLC]
46510
46435
-
Arg
TCT
[ENA]
¡û
>W2010339819
CADADD010000017
Bacillota
Ruminococcaceae bacterium [CADADD]
67358
67282
-
Arg
TCT
[ENA]
¡û
>W2010345253
CADBTB010000143
Bacillota
Ruminococcaceae bacterium [CADBTB]
1724
1800
+
Arg
TCT
[ENA]
¡û
>W2110177863
JABFHK010000014
Bacillota
Intestinimonas butyriciproducens GGCC_0179 [JABFHK]
37050
36974
-
Arg
TCT
[ENA]
¡û
>W2110246862
JACOQJ010000012
Bacillota
Dysosmobacter sp. NSJ-60 [JACOQJ]
46665
46741
+
Arg
TCT
[ENA]
¡û
>W2110340268
JADMQW010000014
Bacillota
Intestinimonas butyriciproducens D40t1_170626_B2 [JADMQW]
49175
49251
+
Arg
TCT
[ENA]
¡û
>W2110340751
JADMRO010000012
Bacillota
Intestinimonas butyriciproducens D59t2_181005_A6 [JADMRO]
45367
45291
-
Arg
TCT
[ENA]
¡û
>W2110351700
JADNGR010000016
Bacillota
Intestinimonas butyriciproducens BSD2780061687b_171204_A3 [JADNGR]
55592
55516
-
Arg
TCT
[ENA]
¡û
>W2110368016
JADPFH010000031
Bacillota
Intestinimonas butyriciproducens J1101653_170612_D4 [JADPFH]
25425
25349
-
Arg
TCT
[ENA]
¡û
>W2110368372
JADPFT010000011
Bacillota
Intestinimonas butyriciproducens 1001302B_160321_E11 [JADPFT]
50481
50405
-
Arg
TCT
[ENA]
¡û
>W2110618477
JAHLNE010000005
Bacillota
Intestinimonas butyriciproducens O-10 [JAHLNE]
52776
52700
-
Arg
TCT
[ENA]
¡û
>C201308814
LR698981
Bacillota
Clostridiales bacterium [LR698981]
2542758
2542682
-
Arg
TCT
-
¡û
>C211012673
AP023415
Bacillota
Oscillibacter sp. MM35 [AP023415]
1363098
1363022
-
Arg
TCT
-
¡û
>C211012762
AP023420
Bacillota
Oscillibacter sp. MM59 [AP023420]
2380661
2380737
+
Arg
TCT
-
¡û
>W2110725318
JAJCHB010000017
Bacillota
Intestinimonas butyriciproducens SL.3.04 [JAJCHB]
33879
33955
+
Arg
TCT
[ENA]
¡û
>W2110739222
JAJEQY010000154
Bacillota
Intestinimonas sp. CLA-AA-H199 [JAJEQY]
2929
3005
+
Arg
TCT
[ENA]
¡û
>W1511303134
JPJD01000031
Bacillota
Intestinimonas butyriciproducens ER1 [JPJD]
8176
8252
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK