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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161950 (46 seq.)
>C019128
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
3379605
3379681
+
Asp
GTC
[Ensembl]
¡û
>w001328
AAAG02000001
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
642661
642739
+
Asp
GTC
[ENA]
¡û
>WENV170892882
MDTD01044195
[MDTD] marine metagenome; seawater
73197
73273
+
Asp
GTC
[ENA]
¡û
>WENV170958941
MKWU01002482
[MKWU] sponge metagenome;
17042
16966
-
Asp
GTC
[ENA]
¡û
>W1910285206
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
69663
69739
+
Asp
GTC
[ENA]
¡û
>W1910285207
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
69800
69876
+
Asp
GTC
[ENA]
¡û
>W1910285208
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
69922
69998
+
Asp
GTC
[ENA]
¡û
>W1910285209
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
70046
70122
+
Asp
GTC
[ENA]
¡û
>W1810583946
QEXV01000003
Alphaproteobacteria
Marinicauda salina WD6-1 [QEXV]
130746
130670
-
Asp
GTC
[ENA]
¡û
>W1810693143
QLLC01000004
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
112090
112166
+
Asp
GTC
[ENA]
¡û
>W1810693160
QLLC01000014
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
90114
90190
+
Asp
GTC
[ENA]
¡û
>W1810693161
QLLC01000014
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
90395
90471
+
Asp
GTC
[ENA]
¡û
>C151099547
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
1360479
1360555
+
Asp
GTC
[Ensembl]
¡û
>C151099548
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
1360593
1360669
+
Asp
GTC
[Ensembl]
¡û
>W2010105485
BJZO01000067
Alphaproteobacteria
Pararhodospirillum oryzae NBRC 107573 [BJZO]
9655
9731
+
Asp
GTC
[ENA]
¡û
>W2010105486
BJZO01000067
Alphaproteobacteria
Pararhodospirillum oryzae NBRC 107573 [BJZO]
9776
9852
+
Asp
GTC
[ENA]
¡û
>W2010370243
CAHJWP010000218
Alphaproteobacteria
Sphingomonadaceae bacterium [CAHJWP]
1192
1116
-
Asp
GTC
[ENA]
¡û
>W2010703692
JACHII010000010
Alphaproteobacteria
Roseospira marina DSM 15113 [JACHII]
66603
66679
+
Asp
GTC
[ENA]
¡û
>W2010727930
JACIGF010000001
Alphaproteobacteria
Rhodothalassium salexigens DSM 2132 [JACIGF]
304951
304875
-
Asp
GTC
[ENA]
¡û
>W2010728079
JACIGI010000019
Alphaproteobacteria
Roseospira goensis JA135 [JACIGI]
56250
56326
+
Asp
GTC
[ENA]
¡û
>W2010728126
JACIGJ010000011
Alphaproteobacteria
Roseospira marina DSM 15113 [JACIGJ]
66603
66679
+
Asp
GTC
[ENA]
¡û
>W2010728161
JACIGK010000007
Alphaproteobacteria
Roseospira visakhapatnamensis JA131 [JACIGK]
96948
97024
+
Asp
GTC
[ENA]
¡û
>W2011623279
SLXO01000001
Alphaproteobacteria
Rhodothalassium salexigens DSM 2132 [SLXO]
311024
310948
-
Asp
GTC
[ENA]
¡û
>W2012197263
VWPJ01000012
Alphaproteobacteria
Roseospira marina DSM 15113 [VWPJ]
73117
73041
-
Asp
GTC
[ENA]
¡û
>W2012341819
WIVE01000092
Alphaproteobacteria
Roseospira navarrensis DSM 15114 [WIVE]
10191
10267
+
Asp
GTC
[ENA]
¡û
>W2110049669
BMYV01000001
Alphaproteobacteria
Litorimonas cladophorae KCTC 23968 [BMYV]
801821
801745
-
Asp
GTC
[ENA]
¡û
>C211117376
CP058669
Alphaproteobacteria
Hyphobacterium sp. CCMP332 [CP058669]
838751
838827
+
Asp
GTC
-
¡û
>C211361143
CP077803
Alphaproteobacteria
Rhodospirillum rubrum DSM 467 [CP077803]
3379624
3379700
+
Asp
GTC
-
¡û
>W2110751749
NHSA01000054
Alphaproteobacteria
Rhodothalassium salexigens IM265 [NHSA]
95083
95159
+
Asp
GTC
[ENA]
¡û
>W2110751789
NHSB01000048
Alphaproteobacteria
Rhodothalassium salexigens IM261 [NHSB]
95081
95157
+
Asp
GTC
[ENA]
¡û
>W2110752246
NHSM01000192
Alphaproteobacteria
Rhodospirillum rubrum FR1-mutantIV [NHSM]
19950
20026
+
Asp
GTC
[ENA]
¡û
>W2110753865
NRRX01000020
Alphaproteobacteria
Rhodothalassium salexigens DSM 2132 [NRRX]
3226
3302
+
Asp
GTC
[ENA]
¡û
>W2110754070
NRSB01000120
Alphaproteobacteria
Rhodospirillum rubrum DSM 1068 [NRSB]
1551
1627
+
Asp
GTC
[ENA]
¡û
>W2110754116
NRSC01000127
Alphaproteobacteria
Rhodospirillum rubrum DSM 107 [NRSC]
1553
1629
+
Asp
GTC
[ENA]
¡û
>W2130018665
JACZHT010000002
Alphaproteobacteria
Phaeovibrio sulfidiphilus DSM 23193 [JACZHT]
325312
325236
-
Asp
GTC
[ENA]
¡û
>W2130018666
JACZHT010000002
Alphaproteobacteria
Phaeovibrio sulfidiphilus DSM 23193 [JACZHT]
325205
325129
-
Asp
GTC
[ENA]
¡û
>W2130019086
JADBIA010000005
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
95443
95519
+
Asp
GTC
[ENA]
¡û
>W2130019087
JADBIA010000005
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
95619
95695
+
Asp
GTC
[ENA]
¡û
>WENV039602
AACY022021211
Marine microbial communities from Global Ocean Sampling (GOS)
495
417
-
Asp
GTC
[ENA]
>C11118842
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
3379605
3379681
+
Asp
GTC
[Ensembl]
¡û
>WENV078219
AAFZ01010185
Fossil microbial community from Whale Fall (Santa Cruz Basin)
432
356
-
Asp
GTC
[ENA]
>WENV078251
AAFZ01015232
Fossil microbial community from Whale Fall (Santa Cruz Basin)
267
191
-
Asp
GTC
[ENA]
>W1710514007
FNAP01000002
Alphaproteobacteria
Rhodospira trueperi [FNAP]
317062
316986
-
Asp
GTC
[ENA]
¡û
>W1710527562
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
1750846
1750770
-
Asp
GTC
[ENA]
¡û
>W1710527563
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
1750723
1750647
-
Asp
GTC
[ENA]
¡û
>W1710527564
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
1750601
1750525
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK