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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161961 (41 seq.)
>W1711510301
MLAV01000039
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
44332
44256
-
Arg
TCT
[ENA]
¡û
>W1711510323
MLAV01000182
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
9169
9093
-
Arg
TCT
[ENA]
¡û
>WENV183741810
PJUG01017741
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
46
120
+
Arg
TCT
[ENA]
¡û
>C181001914
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
2415875
2415949
+
Arg
TCT
-
¡û
>W1810393035
PYAW01000002
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
1219533
1219607
+
Arg
TCT
[ENA]
¡û
>W1810532587
QCYK01000004
Bacteroidota
Chitinophaga parva LY-1 [QCYK]
140624
140698
+
Arg
TCT
[ENA]
¡û
>W1810586465
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
1474208
1474282
+
Arg
TCT
[ENA]
¡û
>W1810694432
QLMA01000001
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
1194532
1194606
+
Arg
TCT
[ENA]
¡û
>W1810695391
QLNL01000005
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
145018
145092
+
Arg
TCT
[ENA]
¡û
>W1810721948
QNTR01000005
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
145018
145092
+
Arg
TCT
[ENA]
¡û
>W1810762387
QPMM01000010
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
126695
126621
-
Arg
TCT
[ENA]
¡û
>W1810858497
QTJU01000010
Bacteroidota
Deminuibacter soli K23C18032701 [QTJU]
20845
20919
+
Arg
TCT
[ENA]
¡û
>W2010106712
BKAT01000015
Bacteroidota
Chitinophaga terrae Kim and Jung 2007 NBRC 109751 [BKAT]
144123
144197
+
Arg
TCT
[ENA]
¡û
>W2010169500
CABFVU010000004
Bacteroidota
Chitinophaga polysaccharea CSUR P9684 [CABFVU]
230051
230125
+
Arg
TCT
[ENA]
¡û
>W2010213335
CABHMS010000004
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
559166
559240
+
Arg
TCT
[ENA]
¡û
>W2010213391
CABHMT010000004
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
1891827
1891901
+
Arg
TCT
[ENA]
¡û
>W2010445852
JAABOK010000010
Bacteroidota
Chitinophaga sp. O9 [JAABOK]
208398
208472
+
Arg
TCT
[ENA]
¡û
>W2010585556
JABAIA010000002
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
1497857
1497931
+
Arg
TCT
[ENA]
¡û
>W2010586301
JABAOB010000012
Bacteroidota
Chitinophaga sp. Ak27 [JABAOB]
275079
275005
-
Arg
TCT
[ENA]
¡û
>W2011429043
RIAR02000001
Bacteroidota
Chitinophaga sp. Mgbs1 [RIAR]
7961051
7961125
+
Arg
TCT
[ENA]
¡û
>W2011615639
SJXL01000001
Bacteroidota
Arachidicoccus sp. B3-10 [SJXL]
1891797
1891723
-
Arg
TCT
[ENA]
¡û
>W2011652424
SNZS01000014
Bacteroidota
Chitinophaga sp. OK723 [SNZS]
128979
128905
-
Arg
TCT
[ENA]
¡û
>W2012047973
VIWC01000008
Bacteroidota
Filimonas endophytica 3197 [VIWC]
653
579
-
Arg
TCT
[ENA]
¡û
>W2012048669
VIWO01000015
Bacteroidota
Chitinophaga polysaccharea 1209 [VIWO]
82076
82150
+
Arg
TCT
[ENA]
¡û
>W2012202934
VWWO01000003
Bacteroidota
Chitinophaga sp. Cy-1792 [VWWO]
1190261
1190335
+
Arg
TCT
[ENA]
¡û
>W2110026051
BMIB01000003
Bacteroidota
Filimonas zeae CGMCC 1.15290 [BMIB]
82561
82487
-
Arg
TCT
[ENA]
¡û
>W2110269461
JACVFB010000008
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
327396
327322
-
Arg
TCT
[ENA]
¡û
>W2110269502
JACVFC010000002
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
128654
128580
-
Arg
TCT
[ENA]
¡û
>W2110426499
JAELUL010000025
Bacteroidota
Chitinophaga sp. ASV3 [JAELUL]
12123
12049
-
Arg
TCT
[ENA]
¡û
>W2110575317
JAGTXB010000003
Bacteroidota
Chitinophaga sp. 2R12 [JAGTXB]
377645
377571
-
Arg
TCT
[ENA]
¡û
>W2110649203
JAHUWJ010000002
Bacteroidota
Chitinophaga sp. sic0106 [JAHUWJ]
479683
479757
+
Arg
TCT
[ENA]
¡û
>C201139874
CP044016
Bacteroidota
Arachidicoccus sp. B3-10 [CP044016]
1891797
1891723
-
Arg
TCT
-
¡û
>C211325039
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
2972831
2972757
-
Arg
TCT
-
¡û
>C241149314
CP051204
Bacteroidota
Chitinophaga oryzae 1303 [CP051204]
6140565
6140491
-
Arg
TCT
-
¡û
>C241149385
CP051205
Bacteroidota
Chitinophaga oryzae 1310 [CP051205]
4180357
4180283
-
Arg
TCT
-
¡û
>W1710533835
FNRL01000001
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
121614
121538
-
Arg
TCT
[ENA]
¡û
>W1710555321
FOJG01000002
Bacteroidota
Chitinophaga arvensicola [FOJG]
2484395
2484321
-
Arg
TCT
[ENA]
¡û
>W1710591012
FRBL01000002
Bacteroidota
Chitinophaga jiangningensis [FRBL]
381135
381061
-
Arg
TCT
[ENA]
¡û
>W1710599376
FTOR01000006
Bacteroidota
Filimonas lacunae [FTOR]
12654
12728
+
Arg
TCT
[ENA]
¡û
>W1710601066
FUWZ01000001
Bacteroidota
Chitinophaga eiseniae [FUWZ]
1559917
1559993
+
Arg
TCT
[ENA]
¡û
>W1710604538
FUZZ01000006
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
324955
325031
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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