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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162017 (22 seq.)
>W1711078559
LSMZ01000062
Bacillota
Clostridium sp. link-BC1 [LSMZ]
2284
2208
-
Arg
TCT
[ENA]
¡û
>W1711222559
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
1606044
1605968
-
Arg
TCT
[ENA]
¡û
>C007108
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
234276
234352
+
Arg
TCT
[Ensembl]
¡û
>W08011379
ABVG01000004
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
46635
46711
+
Arg
TCT
[ENA]
¡û
>W141233356
BAVR01000003
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
82710
82634
-
Arg
TCT
[ENA]
¡û
>W141251463
CBQO010000010
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
196
272
+
Arg
TCT
[ENA]
¡û
>WENV170686021
LFRM01121987
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
102065
101989
-
Arg
TCT
[ENA]
¢þ
>WENV170720165
LSQX01143525
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
47747
47823
+
Arg
TCT
[ENA]
¢þ
>C181114052
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
2556749
2556673
-
Arg
TCT
-
¡û
>W09100431
AABG04000001
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
255443
255367
-
Arg
TCT
[ENA]
¡û
>W09100486
AABG04000141
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
403
327
-
Arg
TCT
[ENA]
¡û
>W09135667
ACVX01000019
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
45151
45227
+
Arg
TCT
[ENA]
¡û
>W1910884604
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
3500207
3500131
-
Arg
TCT
[ENA]
¡û
>W1911496630
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
1617440
1617516
+
Arg
TCT
[ENA]
¡û
>W1911572342
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2413292
2413216
-
Arg
TCT
[ENA]
¡û
>C11106494
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2407751
2407675
-
Arg
TCT
[Ensembl]
¡û
>C161060803
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2413292
2413216
-
Arg
TCT
-
¡û
>C161097555
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2412603
2412527
-
Arg
TCT
-
¡û
>W121061311
AJGS01000062
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
45179
45255
+
Arg
TCT
[ENA]
¡û
>W121061360
AJGT01000029
Bacillota
Acetivibrio thermocellus YS [AJGT]
37705
37629
-
Arg
TCT
[ENA]
¡û
>W1610605968
LFSL01000056
Bacillota
Clostridiales bacterium DTU058 [LFSL]
102065
101989
-
Arg
TCT
[ENA]
¡û
>W1710727255
LFSL01000056
Bacillota
Clostridiales bacterium DTU058 [LFSL]
102065
101989
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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