This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162028 (45 seq.)
>W131161246
AQXL01000134
Bacillota
Effusibacillus pohliae DSM 22757 [AQXL]
106963
107039
+
Ile
GAT
[ENA]
¡û
>C171119012
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1829586
1829662
+
Ile
GAT
-
¡û
>C171119022
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1842303
1842379
+
Ile
GAT
-
¡û
>C171119040
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2003761
2003837
+
Ile
GAT
-
¡û
>C171119071
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3054189
3054265
+
Ile
GAT
-
¡û
>C171119085
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3262377
3262453
+
Ile
GAT
-
¡û
>C171119097
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3263644
3263720
+
Ile
GAT
-
¡û
>C171119141
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3818602
3818678
+
Ile
GAT
-
¡û
>C171119180
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
18475
18399
-
Ile
GAT
-
¡û
>C171119186
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
17573
17497
-
Ile
GAT
-
¡û
>C171119189
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
16911
16835
-
Ile
GAT
-
¡û
>WENV183156246
OLOS01005056
[OLOS] human gut metagenome; faeces
2512
2436
-
Ile
GAT
[ENA]
¡û
>C181070237
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1343136
1343212
+
Ile
GAT
-
¡û
>C181070243
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1344565
1344641
+
Ile
GAT
-
¡û
>C181070288
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4328290
4328214
-
Ile
GAT
-
¡û
>C181070298
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4318880
4318804
-
Ile
GAT
-
¡û
>C181070334
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3334423
3334347
-
Ile
GAT
-
¡û
>C181070348
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3148202
3148126
-
Ile
GAT
-
¡û
>C181070360
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3146865
3146789
-
Ile
GAT
-
¡û
>C181070389
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2607504
2607428
-
Ile
GAT
-
¡û
>W1810596182
QGGL01000003
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
288142
288066
-
Ile
GAT
[ENA]
¡û
>W1810596241
QGGL01000010
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
190741
190817
+
Ile
GAT
[ENA]
¡û
>W1810596258
QGGL01000014
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
3595
3671
+
Ile
GAT
[ENA]
¡û
>W1810596316
QGGL01000034
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
8744
8820
+
Ile
GAT
[ENA]
¡û
>W1810596345
QGGL01000042
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
1454
1378
-
Ile
GAT
[ENA]
¡û
>W1810596349
QGGL01000042
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
749
673
-
Ile
GAT
[ENA]
¡û
>W1810596363
QGGL01000043
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
759
683
-
Ile
GAT
[ENA]
¡û
>W1810596373
QGGL01000050
Bacillota
Tumebacillus permanentifrigoris DSM 18773 [QGGL]
696
620
-
Ile
GAT
[ENA]
¡û
>W2011623485
SLXS01000001
Bacillota
Tumebacillus sp. BK434 [SLXS]
390132
390208
+
Ile
GAT
[ENA]
¡û
>W2011623527
SLXS01000006
Bacillota
Tumebacillus sp. BK434 [SLXS]
127413
127489
+
Ile
GAT
[ENA]
¡û
>W2011623544
SLXS01000007
Bacillota
Tumebacillus sp. BK434 [SLXS]
162977
163053
+
Ile
GAT
[ENA]
¡û
>W2011623554
SLXS01000007
Bacillota
Tumebacillus sp. BK434 [SLXS]
163963
164039
+
Ile
GAT
[ENA]
¡û
>W2011623594
SLXS01000024
Bacillota
Tumebacillus sp. BK434 [SLXS]
1606
1682
+
Ile
GAT
[ENA]
¡û
>W2011623600
SLXS01000024
Bacillota
Tumebacillus sp. BK434 [SLXS]
2611
2687
+
Ile
GAT
[ENA]
¡û
>W2011623603
SLXS01000024
Bacillota
Tumebacillus sp. BK434 [SLXS]
3426
3502
+
Ile
GAT
[ENA]
¡û
>W2011623618
SLXS01000028
Bacillota
Tumebacillus sp. BK434 [SLXS]
1843
1919
+
Ile
GAT
[ENA]
¡û
>W2110440135
JAEQNB010000003
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
560051
559975
-
Ile
GAT
[ENA]
¡û
>W2110440186
JAEQNB010000005
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
1568
1492
-
Ile
GAT
[ENA]
¡û
>W2110440198
JAEQNB010000006
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
386145
386069
-
Ile
GAT
[ENA]
¡û
>W2110440230
JAEQNB010000012
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
2870
2794
-
Ile
GAT
[ENA]
¡û
>W2110440242
JAEQNB010000012
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
1139
1063
-
Ile
GAT
[ENA]
¡û
>W2110440248
JAEQNB010000012
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
598
522
-
Ile
GAT
[ENA]
¡û
>W2110440271
JAEQNB010000022
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
219
143
-
Ile
GAT
[ENA]
¡û
>W2110440282
JAEQNB010000023
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
1945
2021
+
Ile
GAT
[ENA]
¡û
>W2110440293
JAEQNB010000029
Bacillota
Tumebacillus sp. ITR2 [JAEQNB]
865
789
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK