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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162050 (78 seq.)
>W1710882878
LMVE01000012
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
18580
18653
+
Met
CAT
[ENA]
¡û
>W131058358
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
168981
168906
-
Met
CAT
[ENA]
¡û
>W1711081225
LSSA01000088
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
40126
40051
-
Met
CAT
[ENA]
¡û
>W1711116529
LUBZ01000012
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
55174
55247
+
Met
CAT
[ENA]
¡û
>W1711120919
LUHJ01000026
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
158261
158188
-
Met
CAT
[ENA]
¡û
>W1711261777
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
3371308
3371381
+
Met
CAT
[ENA]
¡û
>W1711335576
MBQX01000014
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
16039
16112
+
Met
CAT
[ENA]
¡û
>W1711335614
MBQY01000012
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
60632
60559
-
Met
CAT
[ENA]
¡û
>W1711335780
MBRD01000017
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
79262
79337
+
Met
CAT
[ENA]
¡û
>W1711666704
MRCE01000047
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
3897
3970
+
Met
CAT
[ENA]
¡û
>W1711666706
MRCF01000001
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
153968
154044
+
Met
CAT
[ENA]
¡û
>W1711711337
MTAV01000096
Cyanobacteriota
Nostoc sp. T09 [MTAV]
28358
28283
-
Met
CAT
[ENA]
¡û
>W1711711378
MTAW01000162
Cyanobacteriota
Nostoc sp. 106C [MTAW]
53681
53606
-
Met
CAT
[ENA]
¡û
>W1711711470
MTAX01000138
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
294380
294455
+
Met
CAT
[ENA]
¡û
>W131036554
ALVW01000015
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
245511
245437
-
Met
CAT
[ENA]
¡û
>W131065838
ANNX01000085
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
42188
42261
+
Met
CAT
[ENA]
¡û
>C001233
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
2508478
2508405
-
Met
CAT
[Ensembl]
¡û
>C015289
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
5542179
5542252
+
Met
CAT
[Ensembl]
¡û
>C171097534
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
3948694
3948769
+
Met
CAT
-
¡û
>WENV171003094
NNBT01000745
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
216
290
+
Met
CAT
[ENA]
¢þ
>WENV171003474
NNBU01000079
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
41175
41249
+
Met
CAT
[ENA]
¢þ
>WENV171003684
NNBV01000130
[NNBV] plant metagenome; symbiotic tissue sample KVS11
14710
14636
-
Met
CAT
[ENA]
¢þ
>C181004767
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
7371784
7371711
-
Met
CAT
-
¡û
>C181078409
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
3616993
3617066
+
Met
CAT
-
¡û
>C181137717
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4389763
4389837
+
Met
CAT
-
¡û
>C181137810
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5351471
5351546
+
Met
CAT
-
¡û
>C191001297
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
99807
99732
-
Met
CAT
-
¡û
>W09101164
AAEA01000021
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
13702
13629
-
Met
CAT
[ENA]
¡û
>W1910008369
BDGE01000001
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
98443
98368
-
Met
CAT
[ENA]
¡û
>W1910020502
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4772177
4772252
+
Met
CAT
[ENA]
¡û
>W1910175530
BJCE01000496
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
891
816
-
Met
CAT
[ENA]
¡û
>W1910596243
LAGX01000062
Cyanobacteriota
Nostoc linckia z1 [LAGX]
40676
40602
-
Met
CAT
[ENA]
¡û
>W1910596307
LAGY01000062
Cyanobacteriota
Nostoc linckia z2 [LAGY]
41141
41067
-
Met
CAT
[ENA]
¡û
>W1910596492
LAHA01000082
Cyanobacteriota
Nostoc linckia z4 [LAHA]
40996
40922
-
Met
CAT
[ENA]
¡û
>W1910596516
LAHB01000032
Cyanobacteriota
Nostoc linckia z6 [LAHB]
11590
11664
+
Met
CAT
[ENA]
¡û
>W1910596652
LAHC01000105
Cyanobacteriota
Nostoc linckia z7 [LAHC]
11453
11527
+
Met
CAT
[ENA]
¡û
>W1910596698
LAHD01000045
Cyanobacteriota
Nostoc linckia z8 [LAHD]
40859
40785
-
Met
CAT
[ENA]
¡û
>W1910596816
LAHE01000100
Cyanobacteriota
Nostoc linckia z9 [LAHE]
16619
16545
-
Met
CAT
[ENA]
¡û
>W1910596985
LAHG01000103
Cyanobacteriota
Nostoc linckia z14 [LAHG]
16814
16740
-
Met
CAT
[ENA]
¡û
>W1910597058
LAHH01000085
Cyanobacteriota
Nostoc linckia z15 [LAHH]
16619
16545
-
Met
CAT
[ENA]
¡û
>W1910792692
MRBZ01000134
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
19464
19390
-
Met
CAT
[ENA]
¡û
>W1910805285
MTPU01000054
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
214143
214216
+
Met
CAT
[ENA]
¡û
>W1910859286
NBYN01000054
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
254601
254674
+
Met
CAT
[ENA]
¡û
>W1910943177
NJHS01000030
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
16096
16169
+
Met
CAT
[ENA]
¡û
>W1910943232
NJHT01000380
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
187872
187799
-
Met
CAT
[ENA]
¡û
>W1910943257
NJHU01000042
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
16596
16669
+
Met
CAT
[ENA]
¡û
>W1910943293
NJHV01000171
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
22988
23061
+
Met
CAT
[ENA]
¡û
>W1910943324
NJHW01000017
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
104869
104796
-
Met
CAT
[ENA]
¡û
>W1910943357
NJHX01000006
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
23321
23394
+
Met
CAT
[ENA]
¡û
>W1910943407
NJHY01000020
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
22976
23049
+
Met
CAT
[ENA]
¡û
>W1910943441
NJHZ01000011
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
22970
23043
+
Met
CAT
[ENA]
¡û
>W1910943505
NJIA01000238
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
199986
199913
-
Met
CAT
[ENA]
¡û
>W1911118668
NOLI01000103
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
5835
5909
+
Met
CAT
[ENA]
¡û
>W1911118754
NOLJ01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
238801
238875
+
Met
CAT
[ENA]
¡û
>W1911118819
NOLK01000067
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
18767
18693
-
Met
CAT
[ENA]
¡û
>W1911153658
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
2925090
2925163
+
Met
CAT
[ENA]
¡û
>W1911153702
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
2381807
2381734
-
Met
CAT
[ENA]
¡û
>W1810355670
PVMC01000063
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
161235
161162
-
Met
CAT
[ENA]
¡û
>W10106041
ACYA01000064
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
114309
114236
-
Met
CAT
[ENA]
¡û
>W10106056
ACYB01000019
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
32327
32254
-
Met
CAT
[ENA]
¡û
>W11108364
ACYA01000064
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
114309
114236
-
Met
CAT
[ENA]
¡û
>W11108379
ACYB01000019
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
32327
32254
-
Met
CAT
[ENA]
¡û
>W1511013843
JHEG02000037
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
768575
768501
-
Met
CAT
[ENA]
¡û
>W1511501738
JXCB01000012
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
1088115
1088189
+
Met
CAT
[ENA]
¡û
>C161002539
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
749717
749644
-
Met
CAT
[Ensembl]
¡û
>C161038917
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
5455043
5454968
-
Met
CAT
[Ensembl]
¡û
>W1610084862
CDHJ01000098
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
10318
10244
-
Met
CAT
[ENA]
¡û
>C131004203
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
397290
397215
-
Met
CAT
[Ensembl]
¡û
>C131010341
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
3399018
3398943
-
Met
CAT
[Ensembl]
¡û
>C131004271
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5031443
5031516
+
Met
CAT
[Ensembl]
¡û
>W1610656802
LJOR01000043
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
135236
135309
+
Met
CAT
[ENA]
¡û
>W1610744804
LMVE01000012
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
18580
18653
+
Met
CAT
[ENA]
¡û
>W1610927771
LUBZ01000012
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
55174
55247
+
Met
CAT
[ENA]
¡û
>W1610932116
LUHI01000035
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
76004
76077
+
Met
CAT
[ENA]
¡û
>W1610932156
LUHJ01000026
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
158261
158188
-
Met
CAT
[ENA]
¡û
>W1611023752
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
3371308
3371381
+
Met
CAT
[ENA]
¡û
>W1611066487
MBRD01000017
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
79262
79337
+
Met
CAT
[ENA]
¡û
>W1710089724
CDHJ01000098
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
10318
10244
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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