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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162070 (37 seq.)
>W1710852992
LLWF02000018
Alphaproteobacteria
Roseomonas mucosa [LLWF]
39462
39535
+
Pro
TGG
[ENA]
¡û
>W131225086
AUDH01000007
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
130233
130160
-
Pro
TGG
[ENA]
¡û
>C171039543
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1860972
1861045
+
Pro
TGG
-
¡û
>C171074541
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1062557
1062630
+
Pro
TGG
-
¡û
>C171074645
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1071173
1071246
+
Pro
TGG
-
¡û
>C171074697
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1067582
1067655
+
Pro
TGG
-
¡û
>C171074749
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1071425
1071498
+
Pro
TGG
-
¡û
>C009823
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1062611
1062684
+
Pro
TGG
[Ensembl]
¡û
>W141276641
JADY01000008
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
158065
158138
+
Pro
TGG
[ENA]
¡û
>WENV183673821
ORJL011321505
[ORJL] groundwater metagenome; groundwater
1137
1213
+
Pro
TGG
[ENA]
¡û
>WENV170018641
BBPD01000222
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
195
122
-
Pro
TGG
[ENA]
¡û
>WENV170018643
BBPD01000242
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
20243
20170
-
Pro
TGG
[ENA]
¡û
>WENV170577277
FRDC01004295
[FRDC] freshwater metagenome; water
658
731
+
Pro
TGG
[ENA]
¡û
>C181102056
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
914167
914094
-
Pro
TGG
-
¡û
>W141558706
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
185206
185279
+
Pro
TGG
[ENA]
¡û
>W141779217
JONP01000018
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
12241
12168
-
Pro
TGG
[ENA]
¡û
>W1810605159
QGNA01000009
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
66233
66310
+
Pro
TGG
[ENA]
¡û
>C151004013
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1096006
1096079
+
Pro
TGG
[Ensembl]
¡û
>C151004088
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2377179
2377106
-
Pro
TGG
[Ensembl]
¡û
>W2010473659
JAAIKB010000001
Alphaproteobacteria
Roseomonas sp. PeD5 [JAAIKB]
81292
81368
+
Pro
TGG
[ENA]
¡û
>W2010573828
JAAVNE010000005
Alphaproteobacteria
Roseomonas sp. BU-1 [JAAVNE]
58031
58104
+
Pro
TGG
[ENA]
¡û
>W2010731544
JACIJD010000006
Alphaproteobacteria
Roseomonas pecuniae DSM 25622 [JACIJD]
91402
91329
-
Pro
TGG
[ENA]
¡û
>W2011408218
RCZP01000013
Alphaproteobacteria
Roseomonas nepalensis S9.3B [RCZP]
111693
111620
-
Pro
TGG
[ENA]
¡û
>W2011522017
SACL01000001
Alphaproteobacteria
Rhodovarius sp. CCP-6 [SACL]
602969
603042
+
Pro
TGG
[ENA]
¡û
>W2011603995
SJDM01000002
Alphaproteobacteria
Crenalkalicoccus roseus YIM 78023 [SJDM]
23559
23632
+
Pro
TGG
[ENA]
¡û
>W2011685620
SRXO01000001
Alphaproteobacteria
Siccirubricoccus sp. 1-3 [SRXO]
52419
52492
+
Pro
TGG
[ENA]
¡û
>W2011839008
UGVN01000001
Alphaproteobacteria
Roseomonas mucosa NCTC13291 [UGVN]
3583908
3583835
-
Pro
TGG
[ENA]
¡û
>W2012470622
WWDL01000017
Alphaproteobacteria
Roseomonas deserti CPCC 101081 [WWDL]
97540
97613
+
Pro
TGG
[ENA]
¡û
>W2110315372
JADFCQ010000001
Alphaproteobacteria
Acetobacteraceae bacterium H6797 [JADFCQ]
218703
218630
-
Pro
TGG
[ENA]
¡û
>W2110445354
JAERQN010000009
Alphaproteobacteria
Roseomonas ponticola SYSU M41301 [JAERQN]
89184
89259
+
Pro
TGG
[ENA]
¡û
>W2110556367
JAGIZA010000004
Alphaproteobacteria
Roseomonas sp. SG15 [JAGIZA]
264187
264260
+
Pro
TGG
[ENA]
¡û
>W2110556399
JAGIZB010000003
Alphaproteobacteria
Roseomonas sp. SSH11 [JAGIZB]
131397
131324
-
Pro
TGG
[ENA]
¡û
>W2110762797
RCVR01000004
Alphaproteobacteria
Roseomonas sp. KE2513 [RCVR]
199663
199590
-
Pro
TGG
[ENA]
¡û
>C231412919
CP099471
Alphaproteobacteria
Roseomonas mucosa TT14 [CP099471]
4070491
4070564
+
Pro
TGG
-
¡û
>C241086934
CP044117
Alphaproteobacteria
Roseomonas mucosa FDAARGOS_658 [CP044114, CP044115, CP044116, CP044117]
1628103
1628030
-
Pro
TGG
-
¡û
>W1710084284
BDLP01000189
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
6411
6484
+
Pro
TGG
[ENA]
¡û
>W1710588279
FQZF01000006
Alphaproteobacteria
Roseomonas rosea [FQZF]
191914
191987
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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