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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162089 (100 seq.)
>W1711326328
MBFF02000013
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
4835
4911
+
Leu
CAA
[ENA]
¡û
>WENV180690886
OCZS010033163
[OCZS] soil metagenome; soil
393
319
-
Leu
CAA
[ENA]
¡û
>W141259280
CBYP010000006
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
38888
38962
+
Leu
CAA
[ENA]
¡û
>W141557991
JHVO01000010
Actinomycetota
Geodermatophilaceae bacterium URHB0062 [JHVO]
216725
216799
+
Leu
CAA
[ENA]
¡û
>W141558020
JHVP01000003
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
179320
179394
+
Leu
CAA
[ENA]
¡û
>W09109055
ABTU01000020
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
68087
68011
-
Leu
CAA
[ENA]
¡û
>W141730434
JNII01000008
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
189295
189371
+
Leu
CAA
[ENA]
¡û
>W141730508
JNIK01000005
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
37979
37905
-
Leu
CAA
[ENA]
¡û
>W1910547142
FZNO01000003
Actinomycetota
Blastococcus sp. DSM 44272 [FZNO]
87781
87857
+
Leu
CAA
[ENA]
¡û
>W1910548125
FZOH01000006
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
188338
188414
+
Leu
CAA
[ENA]
¡û
>W1910548503
FZOO01000004
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
316013
315939
-
Leu
CAA
[ENA]
¡û
>W1910646757
LWUA01000278
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
55063
54989
-
Leu
CAA
[ENA]
¡û
>W1911385141
NVPT01000025
Actinomycetota
Geodermatophilus sp. B12 [NVPT]
10903
10829
-
Leu
CAA
[ENA]
¡û
>W1911492072
OBDO01000001
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
984521
984447
-
Leu
CAA
[ENA]
¡û
>W1911495754
OBQI01000005
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
186667
186741
+
Leu
CAA
[ENA]
¡û
>W1911497461
OCNK01000005
Actinomycetota
Blastococcus sp. DSM 44270 [OCNK]
3929
4003
+
Leu
CAA
[ENA]
¡û
>W1810222153
POQT01000010
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
14250
14175
-
Leu
CAA
[ENA]
¡û
>W1810222217
POQU01000077
Actinomycetota
Blastococcus atacamensis P6 [POQU]
7455
7530
+
Leu
CAA
[ENA]
¡û
>W1810364463
PVTG01000003
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
177214
177140
-
Leu
CAA
[ENA]
¡û
>W1810533159
QCZF01000009
Actinomycetota
Blastococcus litoris GP-S2-8 [QCZF]
95543
95468
-
Leu
CAA
[ENA]
¡û
>W1810609382
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
3904355
3904430
+
Leu
CAA
[ENA]
¡û
>W1810676854
QKMH01000009
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
11556
11630
+
Leu
CAA
[ENA]
¡û
>W1810679002
QKNV01000032
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
10961
10885
-
Leu
CAA
[ENA]
¡û
>W1810733385
QOHF01000019
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
313
239
-
Leu
CAA
[ENA]
¡û
>W1810733418
QOHG01000004
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
108968
109043
+
Leu
CAA
[ENA]
¡û
>W1810733467
QOHH01000003
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
151823
151897
+
Leu
CAA
[ENA]
¡û
>W1810733545
QOHI01000005
Actinomycetota
Blastococcus sp. TBT05-19 [QOHI]
188204
188129
-
Leu
CAA
[ENA]
¡û
>W1810733582
QOHJ01000006
Actinomycetota
Blastococcus sp. TF02A-30 [QOHJ]
259445
259370
-
Leu
CAA
[ENA]
¡û
>W1810733642
QOHK01000009
Actinomycetota
Blastococcus sp. TF02-8 [QOHK]
14789
14714
-
Leu
CAA
[ENA]
¡û
>W2010270896
CABKTE020000001
Actinomycetota
Candidatus Blastococcus massiliensis [CABKTE]
169092
169166
+
Leu
CAA
[ENA]
¡û
>W2010415844
FXTJ01000003
Actinomycetota
Geodermatophilus aquaeductus DSM 46834 [FXTJ]
172502
172576
+
Leu
CAA
[ENA]
¡û
>W2010428903
FZNO01000003
Actinomycetota
Blastococcus sp. DSM 44272 [FZNO]
87781
87857
+
Leu
CAA
[ENA]
¡û
>W2010429886
FZOH01000006
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
188338
188414
+
Leu
CAA
[ENA]
¡û
>W2010430264
FZOO01000004
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
316013
315939
-
Leu
CAA
[ENA]
¡û
>W2010471224
JAAGWB010000060
Actinomycetota
Modestobacter muralis DSM 100205 [JAAGWB]
21244
21320
+
Leu
CAA
[ENA]
¡û
>W2010471387
JAAGWE010000031
Actinomycetota
Geodermatophilus normandii I12A-02606 [JAAGWE]
68191
68266
+
Leu
CAA
[ENA]
¡û
>W2010471422
JAAGWF010000010
Actinomycetota
Geodermatophilus sabuli I12A-02694 [JAAGWF]
239000
239074
+
Leu
CAA
[ENA]
¡û
>W2010471459
JAAGWG010000002
Actinomycetota
Blastococcus saxobsidens 67B17 [JAAGWG]
39258
39333
+
Leu
CAA
[ENA]
¡û
>W2010471535
JAAGWH010000058
Actinomycetota
Modestobacter muralis DSM 100205 [JAAGWH]
21244
21320
+
Leu
CAA
[ENA]
¡û
>W2010493000
JAAKGN010000222
Actinomycetota
Modestobacter sp. KNN46-3 [JAAKGN]
582
507
-
Leu
CAA
[ENA]
¡û
>W2010515063
JAAMPA010000002
Actinomycetota
Modestobacter marinus DSM 45201 [JAAMPA]
865582
865656
+
Leu
CAA
[ENA]
¡û
>W2010668730
JACBZT010000001
Actinomycetota
Geodermatophilus daqingensis DSM 104001 [JACBZT]
4160233
4160158
-
Leu
CAA
[ENA]
¡û
>W2010670468
JACCAZ010000001
Actinomycetota
Modestobacter sp. DSM 46791 [JACCAZ]
1664135
1664060
-
Leu
CAA
[ENA]
¡û
>W2010671876
JACCCB010000001
Actinomycetota
Blastococcus sp. DSM 46790 [JACCCB]
159011
159085
+
Leu
CAA
[ENA]
¡û
>W2010715957
JACHXB010000001
Actinomycetota
Geodermatophilus sabuli CECT 8820 [JACHXB]
184316
184390
+
Leu
CAA
[ENA]
¡û
>W2010722349
JACIBU010000001
Actinomycetota
Modestobacter versicolor DSM 16678 [JACIBU]
1320261
1320337
+
Leu
CAA
[ENA]
¡û
>W2010792065
LWUA01000278
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
55063
54989
-
Leu
CAA
[ENA]
¡û
>W2011132582
NVPT01000025
Actinomycetota
Geodermatophilus sp. B12 [NVPT]
10903
10829
-
Leu
CAA
[ENA]
¡û
>W2011153023
OBDO01000001
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
984521
984447
-
Leu
CAA
[ENA]
¡û
>W2011156658
OBQI01000005
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
186667
186741
+
Leu
CAA
[ENA]
¡û
>W2011158365
OCNK01000005
Actinomycetota
Blastococcus sp. DSM 44270 [OCNK]
3929
4003
+
Leu
CAA
[ENA]
¡û
>W2011580156
SHKV01000001
Actinomycetota
Blastococcus saxobsidens DSM 44509 [SHKV]
1099412
1099337
-
Leu
CAA
[ENA]
¡û
>W2011604832
SJEW01000020
Actinomycetota
Modestobacter sp. 1G4 [SJEW]
62970
63044
+
Leu
CAA
[ENA]
¡û
>W2011604892
SJEX01000068
Actinomycetota
Modestobacter sp. 1G6 [SJEX]
15824
15898
+
Leu
CAA
[ENA]
¡û
>W2011673732
SPQJ01000006
Bacillota
Blastococcus sp. AZ43 [SPQJ]
84633
84708
+
Leu
CAA
[ENA]
¡û
>W2011673801
SPQK01000011
Actinomycetota
Blastococcus sp. CT_GayMR16 [SPQK]
68981
68907
-
Leu
CAA
[ENA]
¡û
>W2011673839
SPQL01000006
Actinomycetota
Blastococcus sp. CT_GayMR19 [SPQL]
76606
76532
-
Leu
CAA
[ENA]
¡û
>W2011673895
SPQM01000065
Actinomycetota
Blastococcus sp. CT_GayMR20 [SPQM]
10049
10124
+
Leu
CAA
[ENA]
¡û
>W2011673957
SPQN01000041
Actinomycetota
Geodermatophilus sp. DF01_2 [SPQN]
18515
18439
-
Leu
CAA
[ENA]
¡û
>W2011674048
SPQP01000038
Actinomycetota
Blastococcus sp. TF02A_35 [SPQP]
34374
34449
+
Leu
CAA
[ENA]
¡û
>W2012021035
VFOY01000002
Actinomycetota
Modestobacter multiseptatus DSM 44402 [VFOY]
1163472
1163546
+
Leu
CAA
[ENA]
¡û
>W2012022664
VFQE01000001
Actinomycetota
Blastococcus colisei DSM 46837 [VFQE]
2901531
2901605
+
Leu
CAA
[ENA]
¡û
>W2012081210
VLKF01000001
Actinomycetota
Modestobacter roseus DSM 45764 [VLKF]
987773
987699
-
Leu
CAA
[ENA]
¡û
>W2012096501
VNHI01000001
Actinomycetota
Geodermatophilus sp. DSM 44513 [VNHI]
3634190
3634115
-
Leu
CAA
[ENA]
¡û
>W2012097204
VNHW01000012
Actinomycetota
Blastococcus xanthinilyticus DSM 46842 [VNHW]
42234
42159
-
Leu
CAA
[ENA]
¡û
>W2012330262
WHRZ01000162
Actinomycetota
Modestobacter roseus 1279 [WHRZ]
1948
1874
-
Leu
CAA
[ENA]
¡û
>W2110031504
BMMI01000006
Actinomycetota
Modestobacter marinus CGMCC 4.5581 [BMMI]
191860
191934
+
Leu
CAA
[ENA]
¡û
>W2110166511
JABAKE010000001
Actinomycetota
Modestobacter lapidis DSM 100206 [JABAKE]
378316
378242
-
Leu
CAA
[ENA]
¡û
>W2110178519
JABGCG010000003
Actinomycetota
Blastococcus sp. CPCC 205250 [JABGCG]
175990
176065
+
Leu
CAA
[ENA]
¡û
>W2110178662
JABGCI010000004
Actinomycetota
Blastococcus endophyticus CPCC 205247 [JABGCI]
170264
170338
+
Leu
CAA
[ENA]
¡û
>W2110178703
JABGCJ010000002
Actinomycetota
Modestobacter italicus CPCC 205242 [JABGCJ]
611028
610954
-
Leu
CAA
[ENA]
¡û
>W2110178738
JABGCK010000001
Actinomycetota
Blastococcus aggregatus CPCC 205347 [JABGCK]
194568
194642
+
Leu
CAA
[ENA]
¡û
>W2110436987
JAENZZ010000001
Actinomycetota
Blastococcus sp. TML/M2B [JAENZZ]
1597262
1597188
-
Leu
CAA
[ENA]
¡û
>W2110437049
JAEOAA010000002
Actinomycetota
Blastococcus sp. TML/C7B [JAEOAA]
677000
677074
+
Leu
CAA
[ENA]
¡û
>W2110458809
JAFBCJ010000001
Actinomycetota
Geodermatophilus bullaregiensis DSM 46841 [JAFBCJ]
611939
612014
+
Leu
CAA
[ENA]
¡û
>W2110699665
JAIUJY010000001
Actinomycetota
Blastococcus sp. LR1 [JAIUJY]
178262
178337
+
Leu
CAA
[ENA]
¡û
>C211361027
CP077800
Actinomycetota
Modestobacter sp. L9-4 [CP077800]
4005231
4005156
-
Leu
CAA
-
¡û
>C231360224
CP095412
Actinomycetota
Blastococcus sp. PRF04-17 [CP095412]
1112388
1112462
+
Leu
CAA
-
¡û
>C241359858
CP141261
Actinomycetota
Blastococcus brunescens BMG 8361 [CP141261]
1799310
1799236
-
Leu
CAA
-
¡û
>C10107404
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
3367412
3367488
+
Leu
CAA
[Ensembl]
¡û
>W1511307104
JPMX01000119
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
75828
75752
-
Leu
CAA
[ENA]
¡û
>C121016125
FO117623
Actinomycetota
Blastococcus saxobsidens DD2 [FO117623]
2194921
2194847
-
Leu
CAA
[Ensembl]
¡û
>C121016205
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
3377554
3377628
+
Leu
CAA
[Ensembl]
¡û
>W1611063181
MBFF01000021
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
739
815
+
Leu
CAA
[ENA]
¡û
>W1710512217
FMZF01000005
Actinomycetota
Geodermatophilus telluris [FMZF]
167574
167650
+
Leu
CAA
[ENA]
¡û
>W1710514333
FNAW01000003
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
589177
589103
-
Leu
CAA
[ENA]
¡û
>W1710515388
FNBT01000007
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
43360
43286
-
Leu
CAA
[ENA]
¡û
>W1710522432
FNHE01000005
Actinomycetota
Geodermatophilus siccatus [FNHE]
191027
191101
+
Leu
CAA
[ENA]
¡û
>W1710524342
FNIQ01000007
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
202123
202199
+
Leu
CAA
[ENA]
¡û
>W1710530723
FNOZ01000002
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
176302
176378
+
Leu
CAA
[ENA]
¡û
>W1710544080
FOAO01000012
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
146412
146486
+
Leu
CAA
[ENA]
¡û
>W1710548978
FOEE01000007
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
160505
160581
+
Leu
CAA
[ENA]
¡û
>W1710554066
FOIE01000002
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
195468
195542
+
Leu
CAA
[ENA]
¡û
>W1710560112
FOND01000001
Actinomycetota
Blastococcus sp. DSM 46838 [FOND]
3905
3979
+
Leu
CAA
[ENA]
¡û
>W1710567609
FOSW01000007
Actinomycetota
Geodermatophilus ruber [FOSW]
197668
197744
+
Leu
CAA
[ENA]
¡û
>W1710571789
FOWE01000011
Actinomycetota
Geodermatophilus obscurus [FOWE]
181681
181755
+
Leu
CAA
[ENA]
¡û
>W1710572385
FOWQ01000004
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
308685
308611
-
Leu
CAA
[ENA]
¡û
>W1710577739
FPBA01000008
Actinomycetota
Geodermatophilus amargosae [FPBA]
169788
169864
+
Leu
CAA
[ENA]
¡û
>W1710584905
FQVX01000006
Actinomycetota
Geodermatophilus nigrescens [FQVX]
136772
136848
+
Leu
CAA
[ENA]
¡û
>W1710593473
FRDM01000008
Actinomycetota
Geodermatophilus obscurus [FRDM]
139880
139956
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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