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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162167 (68 seq.)
>W1711178260
LWGO01000014
Gammaproteobacteria
Halomonas caseinilytica elongata [LWGO]
53430
53506
+
Arg
CCG
[ENA]
¡û
>W1711302743
MAJD01000002
Gammaproteobacteria
Halomonas elongata [MAJD]
1496725
1496801
+
Arg
CCG
[ENA]
¡û
>WENV180365994
OBOC01090085
[OBOC] marine metagenome; ocean water
163
87
-
Arg
CCG
[ENA]
¡û
>W141093319
AVBC01000035
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
165773
165697
-
Arg
CCG
[ENA]
¡û
>WENV170294554
CESC01090228
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
586
510
-
Arg
CCG
[ENA]
¡û
>WENV170373197
CETS01199561
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
332
256
-
Arg
CCG
[ENA]
¡û
>WENV170472451
CEVG01163011
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
233
157
-
Arg
CCG
[ENA]
¡û
>WENV170488170
CEVO01124408
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1948
2024
+
Arg
CCG
[ENA]
¡û
>C181052471
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
3963150
3963074
-
Arg
CCG
-
¡û
>C181084548
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
1819875
1819951
+
Arg
CCG
-
¡û
>W141754491
JNVT01000026
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
70636
70712
+
Arg
CCG
[ENA]
¡û
>W1910183866
BJOC01000023
Gammaproteobacteria
Halomonas halmophila NBRC 15537 [BJOC]
89526
89602
+
Arg
CCG
[ENA]
¡û
>W1810385374
PXNS01000004
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
202629
202705
+
Arg
CCG
[ENA]
¡û
>W1810385442
PXNT01000008
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
328449
328373
-
Arg
CCG
[ENA]
¡û
>W1810387663
PXWD01000003
Gammaproteobacteria
Halomonas sp. ND22Bw [PXWD]
328477
328553
+
Arg
CCG
[ENA]
¡û
>W1810424670
PYUQ02000018
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
22859
22783
-
Arg
CCG
[ENA]
¡û
>W1810426013
PYVV01000020
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
50887
50963
+
Arg
CCG
[ENA]
¡û
>W1810444031
PZJK01000001
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
419145
419221
+
Arg
CCG
[ENA]
¡û
>W1810444302
PZJO01000003
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
24162
24086
-
Arg
CCG
[ENA]
¡û
>W1810673452
QJUB01000024
Gammaproteobacteria
Halomonas elongata MH25661 [QJUB]
19029
19105
+
Arg
CCG
[ENA]
¡û
>W2010097481
BJOC01000023
Gammaproteobacteria
Halomonas halmophila NBRC 15537 [BJOC]
89526
89602
+
Arg
CCG
[ENA]
¡û
>W2010099762
BJUS01000030
Gammaproteobacteria
Halomonas halophila NBRC 102604 [BJUS]
44881
44957
+
Arg
CCG
[ENA]
¡û
>W2010103549
BJXU01000053
Gammaproteobacteria
Halomonas cupida NBRC 102219 [BJXU]
21653
21577
-
Arg
CCG
[ENA]
¡û
>W2010716642
JACHXM010000004
Gammaproteobacteria
Halomonas organivorans CECT 5995 [JACHXM]
37130
37206
+
Arg
CCG
[ENA]
¡û
>W2010716794
JACHXP010000005
Gammaproteobacteria
Halomonas cerina CECT 7282 [JACHXP]
14616
14540
-
Arg
CCG
[ENA]
¡û
>W2010716929
JACHXR010000003
Gammaproteobacteria
Halomonas stenophila CECT 7744 [JACHXR]
239451
239527
+
Arg
CCG
[ENA]
¡û
>W2011485436
RRCU01000005
Gammaproteobacteria
Halomonas sp. YLB-10 [RRCU]
276958
277034
+
Arg
CCG
[ENA]
¡û
>W2011497973
RXNS01000007
Gammaproteobacteria
Halomonas nitroreducens 11S [RXNS]
15460
15536
+
Arg
CCG
[ENA]
¡û
>W2011548706
SDMO01000009
Gammaproteobacteria
Halomonas sp. ATF 5.2 [SDMO]
78668
78744
+
Arg
CCG
[ENA]
¡û
>W2012141681
VTPU01000005
Gammaproteobacteria
Halomonas eurihalina MS1 [VTPU]
171651
171575
-
Arg
CCG
[ENA]
¡û
>W2110304965
JADDHN010000004
Gammaproteobacteria
Halomonas elongata BLLS135 [JADDHN]
158813
158737
-
Arg
CCG
[ENA]
¡û
>W2110423418
JAEKJT010000005
Gammaproteobacteria
Halomonas litopenaei SN20-17 [JAEKJT]
69246
69170
-
Arg
CCG
[ENA]
¡û
>W2110508874
JAFLEN010000019
Gammaproteobacteria
Salinicola sp. DM10 [JAFLEN]
545152
545228
+
Arg
CCG
[ENA]
¡û
>W2110651136
JAHVHM010000003
Gammaproteobacteria
Halomonas sp. DP4Y7-2 [JAHVHM]
100178
100102
-
Arg
CCG
[ENA]
¡û
>W2110651406
JAHVHR010000009
Gammaproteobacteria
Halomonas sp. DP5N14-9 [JAHVHR]
9870
9946
+
Arg
CCG
[ENA]
¡û
>W2110651768
JAHVHX010000002
Gammaproteobacteria
Halomonas denitrificans DP5Y7-1 [JAHVHX]
292013
291937
-
Arg
CCG
[ENA]
¡û
>W2110651827
JAHVHY010000003
Gammaproteobacteria
Halomonas sp. DP5Y7-2 [JAHVHY]
294861
294785
-
Arg
CCG
[ENA]
¡û
>W2110652840
JAHVIN010000014
Gammaproteobacteria
Halomonas sp. DP8Y7-1 [JAHVIN]
76988
76912
-
Arg
CCG
[ENA]
¡û
>W2110652864
JAHVIO010000004
Gammaproteobacteria
Halomonas sp. DP8Y7-3 [JAHVIO]
295590
295514
-
Arg
CCG
[ENA]
¡û
>W2110654113
JAHVJM010000003
Gammaproteobacteria
Halomonas sp. DP1Y21-3 [JAHVJM]
437195
437271
+
Arg
CCG
[ENA]
¡û
>W2110655215
JAHVKI010000003
Gammaproteobacteria
Halomonas sp. DP3Y7-1 [JAHVKI]
429361
429437
+
Arg
CCG
[ENA]
¡û
>W2110655266
JAHVKJ010000001
Gammaproteobacteria
Halomonas sp. DP3Y7-2 [JAHVKJ]
310477
310401
-
Arg
CCG
[ENA]
¡û
>W2110655796
JAHVKS010000003
Gammaproteobacteria
Halomonas sp. DP4Y7-1 [JAHVKS]
100178
100102
-
Arg
CCG
[ENA]
¡û
>W2110701077
JAIUZN010000004
Gammaproteobacteria
Halomonas denitrificans DP3Y115-1 [JAIUZN]
73183
73259
+
Arg
CCG
[ENA]
¡û
>W2110701725
JAIVAB010000003
Gammaproteobacteria
Halomonas denitrificans AmN35-1 [JAIVAB]
419369
419445
+
Arg
CCG
[ENA]
¡û
>C231238916
CP087224
Gammaproteobacteria
Halomonas elongata DL7 [CP087224]
3964758
3964682
-
Arg
CCG
-
¡û
>W2110761555
QTKW01000042
Gammaproteobacteria
Halomonas litopenaei LZD012 [QTKW]
8538
8614
+
Arg
CCG
[ENA]
¡û
>C231421420
CP099965
Gammaproteobacteria
Halomonas sp. DN3 [CP099965]
4731203
4731127
-
Arg
CCG
-
¡û
>C231507373
CP107008
Gammaproteobacteria
Halomonas sp. M4R1S46 [CP107008]
4129629
4129553
-
Arg
CCG
-
¡û
>C241024250
CP022134
Gammaproteobacteria
Halomonas sp. HG01 [CP022134]
3410998
3410922
-
Arg
CCG
-
¡û
>C241095947
CP045399
Gammaproteobacteria
Halomonas sp. THAF12 [CP045399]
3677933
3677857
-
Arg
CCG
-
¡û
>C241286910
CP129121
Gammaproteobacteria
Halomonas halophila CCM 3662 [CP129121]
3461384
3461308
-
Arg
CCG
-
¡û
>C241350709
CP139472
Gammaproteobacteria
Halomonas elongata DSM 2581 ATCC 33173 [CP139472]
3572101
3572025
-
Arg
CCG
-
¡û
>C241372252
CP142770
Gammaproteobacteria
Halomonas elongata SEK2 [CP142770]
3643022
3642946
-
Arg
CCG
-
¡û
>C11110105
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
3963388
3963312
-
Arg
CCG
[Ensembl]
¡û
>W1511270572
JOKD01000014
Gammaproteobacteria
Halomonas salina CIFRI 1 [JOKD]
22362
22286
-
Arg
CCG
[ENA]
¡û
>W1511518451
JXYB01000024
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
16468
16392
-
Arg
CCG
[ENA]
¡û
>W1511565252
LAEZ01000041
Gammaproteobacteria
Halomonas sp. HG01 [LAEZ]
75133
75057
-
Arg
CCG
[ENA]
¡û
>C161051035
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
4652994
4652918
-
Arg
CCG
-
¡û
>W1610082154
BDEO01000008
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
218144
218220
+
Arg
CCG
[ENA]
¡û
>W1610082208
BDEP01000014
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
213256
213332
+
Arg
CCG
[ENA]
¡û
>W121063526
AJKS02000012
Gammaproteobacteria
Halomonas smyrnensis AAD6 [AJKS]
66045
65969
-
Arg
CCG
[ENA]
¡û
>W1611053068
MAJD01000002
Gammaproteobacteria
Halomonas elongata [MAJD]
1496725
1496801
+
Arg
CCG
[ENA]
¡û
>W1710080927
BDEO01000008
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
218144
218220
+
Arg
CCG
[ENA]
¡û
>W1710080981
BDEP01000014
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
213256
213332
+
Arg
CCG
[ENA]
¡û
>W1710545756
FOBT01000007
Gammaproteobacteria
Halomonas caseinilytica [FOBT]
213927
214003
+
Arg
CCG
[ENA]
¡û
>W1710589822
FRAL01000006
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [FRAL]
219526
219602
+
Arg
CCG
[ENA]
¡û
>W1710591852
FRCA01000005
Gammaproteobacteria
Halomonas cupida [FRCA]
194414
194338
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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