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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162173 (39 seq.)
>W131098161
AORG01000014
Mycoplasmatota
Mycoplasmopsis arginini 7264 [AORG]
12289
12213
-
Pro
TGG
[ENA]
¡û
>W131098205
AORI01000008
Mycoplasmatota
Metamycoplasma auris 15026 [AORI]
39466
39542
+
Pro
TGG
[ENA]
¡û
>W141051161
AMWK01000006
Mycoplasmatota
Metamycoplasma alkalescens 14918 [AMWK]
49937
49861
-
Pro
TGG
[ENA]
¡û
>C181176682
CP029295
Mycoplasmatota
[Mycoplasma] phocae 105 [CP029295]
589060
588984
-
Pro
TGG
-
¡û
>C191099502
CP033058
Mycoplasmatota
Metamycoplasma phocicerebrale 1049 [CP033058]
92153
92077
-
Pro
TGG
-
¡û
>C191218756
LR215044
Mycoplasmatota
Mycoplasmopsis arginini NCTC10129 [LR215044]
431110
431034
-
Pro
TGG
-
¡û
>C191224749
LS991949
Mycoplasmatota
Metamycoplasma alkalescens NCTC10135 [LS991949]
121107
121183
+
Pro
TGG
-
¡û
>W141557504
JHVF01000003
Mycoplasmatota
Metamycoplasma spumans ATCC 19526 [JHVF]
83180
83104
-
Pro
TGG
[ENA]
¡û
>W1910238014
FPLQ01000011
Chlamydiota
Chlamydia abortus C2_98 [FPLQ]
11889
11965
+
Pro
TGG
[ENA]
¡û
>W1910238582
FPMH01000005
Mycoplasmatota
Chlamydia abortus C10_98 [FPMH]
12280
12204
-
Pro
TGG
[ENA]
¡û
>W1910238669
FPMJ01000002
Chlamydiota
Chlamydia abortus 99DC4 [FPMJ]
73662
73738
+
Pro
TGG
[ENA]
¡û
>W1910238960
FPMR01000010
Mycoplasmatota
Chlamydia abortus C7_98 [FPMR]
11938
11862
-
Pro
TGG
[ENA]
¡û
>W1810585940
QFDN01000005
Mycoplasmatota
Mycoplasmopsis arginini NGR_2017 [QFDN]
12576
12500
-
Pro
TGG
[ENA]
¡û
>W1810657070
QJGS01000002
Mycoplasmatota
Metamycoplasma phocicerebrale 1049 [QJGS]
87639
87563
-
Pro
TGG
[ENA]
¡û
>W1810675902
QKLP01000013
Mycoplasmatota
Metamycoplasma alkalescens ATCC 29103 [QKLP]
11855
11779
-
Pro
TGG
[ENA]
¡û
>W1810682371
QKUB01000001
Mycoplasmatota
Metamycoplasma auris ATCC 51348 [QKUB]
101916
101992
+
Pro
TGG
[ENA]
¡û
>C151002641
AP014631
Mycoplasmatota
Metamycoplasma canadense HAZ360_1 [AP014631]
550613
550689
+
Pro
TGG
[Ensembl]
¡û
>W2010387223
FPLQ01000011
Chlamydiota
Chlamydia abortus C2_98 [FPLQ]
11889
11965
+
Pro
TGG
[ENA]
¡û
>W2010387791
FPMH01000005
Mycoplasmatota
Chlamydia abortus C10_98 [FPMH]
12280
12204
-
Pro
TGG
[ENA]
¡û
>W2010387878
FPMJ01000002
Chlamydiota
Chlamydia abortus 99DC4 [FPMJ]
73662
73738
+
Pro
TGG
[ENA]
¡û
>W2010388169
FPMR01000010
Mycoplasmatota
Chlamydia abortus C7_98 [FPMR]
11938
11862
-
Pro
TGG
[ENA]
¡û
>W2012015471
VFIX01000006
Mycoplasmatota
Mycoplasma equirhinis NCTC 10148 [VFIX]
46401
46325
-
Pro
TGG
[ENA]
¡û
>W2012023784
VFSS01000005
Mycoplasmatota
Mycoplasma falconis ATCC 51372 [VFSS]
5521
5597
+
Pro
TGG
[ENA]
¡û
>W2012029884
VHHP01000006
Mycoplasmatota
Mycoplasma neophronis DSM 24097 [VHHP]
27105
27029
-
Pro
TGG
[ENA]
¡û
>W2110495734
JAFFTD010000001
Mycoplasmatota
Mycoplasma gypis B1T1 [JAFFTD]
365209
365133
-
Pro
TGG
[ENA]
¡û
>W2110495775
JAFFTE010000002
Mycoplasmatota
Mycoplasma sp. CSL 7498 [JAFFTE]
143789
143713
-
Pro
TGG
[ENA]
¡û
>W2110503746
JAFIRD010000004
Mycoplasmatota
Mycoplasma enhydrae 3839-13 [JAFIRD]
1261
1337
+
Pro
TGG
[ENA]
¡û
>W2110626223
JAHMHH010000002
Mycoplasmatota
Mycoplasma zalophi CSL 5346 [JAHMHH]
92286
92210
-
Pro
TGG
[ENA]
¡û
>W2110626243
JAHMHI010000001
Mycoplasmatota
Mycoplasma zalophi CSL9976 [JAHMHI]
20311
20387
+
Pro
TGG
[ENA]
¡û
>C201249281
CP051480
Mycoplasmatota
Mycoplasma sp. C264-NAS [CP051480]
45675
45599
-
Pro
TGG
-
¡û
>C201249294
CP051481
Mycoplasmatota
Mycoplasma sp. Phocoena C-264-GEN [CP051481]
474401
474477
+
Pro
TGG
-
¡û
>C201258683
CP053097
Mycoplasmatota
Mycoplasma sp. Mirounga ES2806-NAS [CP053097]
193595
193671
+
Pro
TGG
-
¡û
>C241341163
CP137845
Mycoplasmatota
Metamycoplasma equirhinis M432/72 [CP137845]
319881
319957
+
Pro
TGG
-
¡û
>C241375234
CP143577
Mycoplasmatota
Mycoplasmopsis arginini NCTC 10129 [CP143577]
431149
431073
-
Pro
TGG
-
¡û
>C241375252
CP143578
Mycoplasmatota
Metamycoplasma gateae 3700 [CP143578]
94627
94703
+
Pro
TGG
-
¡û
>W1510644522
CVNN01000121
Chlamydiota
Chlamydia trachomatis R3059IMS [CVNN]
113
37
-
Pro
TGG
[ENA]
¡û
>W1510644817
CVNU01000004
Chlamydiota
Chlamydia trachomatis R36176extract [CVNU]
36895
36971
+
Pro
TGG
[ENA]
¡û
>W1510644888
CVNV01000011
Chlamydiota
Chlamydia trachomatis R3059extract [CVNV]
2527
2603
+
Pro
TGG
[ENA]
¡û
>C161001001
AP014657
Mycoplasmatota
Mycoplasmopsis arginini HAZ145_1 [AP014657]
199533
199457
-
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK