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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16220 (5 seq.)
>W1711050767
LRRQ01000153
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
38179
38270
+
Ser
GCT
[ENA]
¡û
>WENV180248114
OBEQ010085927
[OBEQ] groundwater metagenome; groundwater
353
444
+
Ser
GCT
[ENA]
¡û
>WENV180266669
OBEQ011776626
[OBEQ] groundwater metagenome; groundwater
2117
2026
-
Ser
GCT
[ENA]
¡û
>C231617101
CP119075
Verrucomicrobiota
Opitutaceae bacterium LMO-M01 [CP119075]
2551624
2551533
-
Ser
GCT
-
¡û
>W1610891896
LRRQ01000153
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
38179
38270
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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