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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162226 (54 seq.)
>C022662
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1416234
1416310
+
Arg
ACG
[Ensembl]
¡û
>C022663
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1416348
1416424
+
Arg
ACG
[Ensembl]
¡û
>C022664
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1416450
1416526
+
Arg
ACG
[Ensembl]
¡û
>C022665
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1416580
1416656
+
Arg
ACG
[Ensembl]
¡û
>WENV180361103
OBNU01121117
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
135
59
-
Arg
ACG
[ENA]
¢þ
>W141277077
JAEH01000066
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
4352
4428
+
Arg
ACG
[ENA]
¡û
>W141277078
JAEH01000066
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
4471
4547
+
Arg
ACG
[ENA]
¡û
>C181061335
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2993640
2993564
-
Arg
ACG
-
¡û
>C181061336
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2993525
2993449
-
Arg
ACG
-
¡û
>C181061337
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2993421
2993345
-
Arg
ACG
-
¡û
>C181061338
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2993290
2993214
-
Arg
ACG
-
¡û
>C191148771
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1212927
1212851
-
Arg
ACG
-
¡û
>C191148772
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1212815
1212739
-
Arg
ACG
-
¡û
>C191148773
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1212703
1212627
-
Arg
ACG
-
¡û
>C191148775
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1212457
1212381
-
Arg
ACG
-
¡û
>C191155915
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2980166
2980090
-
Arg
ACG
-
¡û
>C191155916
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2980061
2979985
-
Arg
ACG
-
¡û
>C191155917
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2979945
2979869
-
Arg
ACG
-
¡û
>C191155918
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2979846
2979770
-
Arg
ACG
-
¡û
>C191155962
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
1336953
1337029
+
Arg
ACG
-
¡û
>C191155963
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
1337054
1337130
+
Arg
ACG
-
¡û
>C191155964
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
1337174
1337250
+
Arg
ACG
-
¡û
>C191155965
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
1337276
1337352
+
Arg
ACG
-
¡û
>C191187221
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2977811
2977735
-
Arg
ACG
-
¡û
>C191187222
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2977696
2977620
-
Arg
ACG
-
¡û
>C191187223
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2977592
2977516
-
Arg
ACG
-
¡û
>C191187224
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2977462
2977386
-
Arg
ACG
-
¡û
>W09104505
AALS01000053
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
24521
24445
-
Arg
ACG
[ENA]
¡û
>W09104506
AALS01000053
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
24407
24331
-
Arg
ACG
[ENA]
¡û
>W09104507
AALS01000053
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
24305
24229
-
Arg
ACG
[ENA]
¡û
>W09104508
AALS01000053
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
24175
24099
-
Arg
ACG
[ENA]
¡û
>W1911581903
PGVH01000027
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
10508
10432
-
Arg
ACG
[ENA]
¡û
>W1911581904
PGVH01000027
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
10398
10322
-
Arg
ACG
[ENA]
¡û
>W1911581905
PGVH01000027
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
10276
10200
-
Arg
ACG
[ENA]
¡û
>W1911581906
PGVH01000027
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
10173
10097
-
Arg
ACG
[ENA]
¡û
>W1911809461
QYYH01000034
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
36315
36391
+
Arg
ACG
[ENA]
¡û
>W1911809462
QYYH01000034
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
36416
36492
+
Arg
ACG
[ENA]
¡û
>W1911809463
QYYH01000034
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
36536
36612
+
Arg
ACG
[ENA]
¡û
>W1911809464
QYYH01000034
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
36638
36714
+
Arg
ACG
[ENA]
¡û
>W1911812315
QZEI01000017
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
74463
74387
-
Arg
ACG
[ENA]
¡û
>W1911812316
QZEI01000017
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
74358
74282
-
Arg
ACG
[ENA]
¡û
>W1911812317
QZEI01000017
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
74242
74166
-
Arg
ACG
[ENA]
¡û
>W1911812318
QZEI01000017
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
74142
74066
-
Arg
ACG
[ENA]
¡û
>W1511302138
JPII01000029
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
190834
190910
+
Arg
ACG
[ENA]
¡û
>W1511302139
JPII01000029
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
190949
191025
+
Arg
ACG
[ENA]
¡û
>W1511302140
JPII01000029
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
191051
191127
+
Arg
ACG
[ENA]
¡û
>W1511302141
JPII01000029
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
191180
191256
+
Arg
ACG
[ENA]
¡û
>W1511366790
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
127100
127024
-
Arg
ACG
[ENA]
¡û
>W1511366791
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
126985
126909
-
Arg
ACG
[ENA]
¡û
>W1511366792
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
126881
126805
-
Arg
ACG
[ENA]
¡û
>W1511366793
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
126751
126675
-
Arg
ACG
[ENA]
¡û
>W1511366794
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
126636
126560
-
Arg
ACG
[ENA]
¡û
>W1511366795
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
126532
126456
-
Arg
ACG
[ENA]
¡û
>W1511366796
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
126402
126326
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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