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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162254 (120 seq.)
>W1710786471
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
569
645
+
Arg
ACG
[ENA]
¡û
>W1710819577
LKPY01000024
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
394
318
-
Arg
ACG
[ENA]
¡û
>W1710932130
LOHZ01000030
Bacillota
Thermovenabulum gondwanense [LOHZ]
27095
27019
-
Arg
ACG
[ENA]
¡û
>W1711313472
MATO01000002
Bacillota
Caryophanon latum [MATO]
88125
88049
-
Arg
ACG
[ENA]
¡û
>W1711313489
MATO01000002
Bacillota
Caryophanon latum [MATO]
220
144
-
Arg
ACG
[ENA]
¡û
>W1711383691
MECQ01000002
Bacillota
Lysinibacillus fusiformis [MECQ]
268948
269024
+
Arg
ACG
[ENA]
¡û
>W1711629279
MPOT01000103
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
1054
978
-
Arg
ACG
[ENA]
¡û
>W131000612
AGEQ01000001
Bacillota
Paenisporosarcina sp. HGH0030 [AGEQ]
114
190
+
Arg
ACG
[ENA]
¡û
>W131000665
AGEQ01000018
Bacillota
Paenisporosarcina sp. HGH0030 [AGEQ]
277642
277718
+
Arg
ACG
[ENA]
¡û
>C171035504
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
881868
881792
-
Arg
ACG
-
¡û
>C171035526
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
2070969
2071045
+
Arg
ACG
-
¡û
>C171035572
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
862487
862411
-
Arg
ACG
-
¡û
>C171036835
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
1994718
1994794
+
Arg
ACG
-
¡û
>C171036882
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
912392
912316
-
Arg
ACG
-
¡û
>C171037687
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
2044486
2044562
+
Arg
ACG
-
¡û
>C171037733
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
827516
827440
-
Arg
ACG
-
¡û
>C171037755
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
1966925
1967001
+
Arg
ACG
-
¡û
>C171037800
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
807060
806984
-
Arg
ACG
-
¡û
>W131225538
AUDQ01000026
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
1206
1282
+
Arg
ACG
[ENA]
¡û
>w023369
AAXV01000010
Bacillota
Bacillus sp. B14905 [AAXV]
87603
87525
-
Arg
ACG
[ENA]
¡û
>WENV181226066
OFDK01000012
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
16435
16359
-
Arg
ACG
[ENA]
¢þ
>WENV181623148
OGMH01004081
[OGMH] metagenome; Human gut stool
234
158
-
Arg
ACG
[ENA]
¢þ
>W141168762
AXVE01000017
Bacillota
Sporosarcina sp. EUR3 2.2.2 [AXVE]
550
626
+
Arg
ACG
[ENA]
¡û
>WENV181828036
OGUM01035717
[OGUM] human gut metagenome; faeces
87
11
-
Arg
ACG
[ENA]
¢þ
>W141265626
CCFJ01000021
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
3946
3870
-
Arg
ACG
[ENA]
¡û
>PL191000914
CP031730
Gammaproteobacteria
Stenotrophomonas rhizophila GA1 plasmid:unnamed1 (CP031730)
5357
5281
-
Arg
ACG
[ENA]
¡û
>C191001327
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2859149
2859073
-
Arg
ACG
-
¡û
>C191001347
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2857187
2857111
-
Arg
ACG
-
¡û
>C191001371
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
471114
471038
-
Arg
ACG
-
¡û
>W141801547
JPEF01000001
Bacillota
Lysinibacillus fusiformis [JPEF]
986249
986173
-
Arg
ACG
[ENA]
¡û
>W1910004445
AVCZ01000118
Bacillota
Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 [AVCZ]
935
859
-
Arg
ACG
[ENA]
¡û
>W1911118375
NOKQ01000217
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
188942
189018
+
Arg
ACG
[ENA]
¡û
>W1911118391
NOKQ01000276
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
1005
1081
+
Arg
ACG
[ENA]
¡û
>W1911495520
OBQC01000006
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
184499
184423
-
Arg
ACG
[ENA]
¡û
>W1911495542
OBQC01000010
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
924
1000
+
Arg
ACG
[ENA]
¡û
>W1911495575
OBQC01000028
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
6717
6641
-
Arg
ACG
[ENA]
¡û
>W1911495606
OBQC01000039
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
1399
1323
-
Arg
ACG
[ENA]
¡û
>W1911535203
OLMT01000001
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
505288
505212
-
Arg
ACG
[ENA]
¡û
>W1911535240
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
654158
654082
-
Arg
ACG
[ENA]
¡û
>W1911535260
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
651988
651912
-
Arg
ACG
[ENA]
¡û
>W1911535289
OLMT01000012
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
116201
116125
-
Arg
ACG
[ENA]
¡û
>W1911535298
OLMT01000014
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
56986
57062
+
Arg
ACG
[ENA]
¡û
>W1911535306
OLMT01000016
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
484968
485044
+
Arg
ACG
[ENA]
¡û
>W1810066884
PDYK01000040
Bacillota
Sporosarcina sp. P10 [PDYK]
268
192
-
Arg
ACG
[ENA]
¡û
>W1810066935
PDYL01000038
Bacillota
Sporosarcina sp. P12(2017) [PDYL]
779
703
-
Arg
ACG
[ENA]
¡û
>W1810067039
PDYN01000042
Bacillota
Sporosarcina sp. P16a [PDYN]
781
705
-
Arg
ACG
[ENA]
¡û
>W1810067093
PDYO01000039
Bacillota
Sporosarcina sp. P16b [PDYO]
980
1056
+
Arg
ACG
[ENA]
¡û
>W1810067149
PDYP01000044
Bacillota
Sporosarcina sp. P17b [PDYP]
407
331
-
Arg
ACG
[ENA]
¡û
>W1810067202
PDYQ01000017
Bacillota
Sporosarcina sp. P18a [PDYQ]
826
750
-
Arg
ACG
[ENA]
¡û
>W1810067253
PDYR01000033
Bacillota
Sporosarcina sp. P19 [PDYR]
789
713
-
Arg
ACG
[ENA]
¡û
>W1810067302
PDYS01000046
Bacillota
Sporosarcina sp. P1 [PDYS]
973
1049
+
Arg
ACG
[ENA]
¡û
>W1810067319
PDYT01000005
Bacillota
Sporosarcina sp. P20a [PDYT]
128920
128844
-
Arg
ACG
[ENA]
¡û
>W1810067411
PDYU01000049
Bacillota
Sporosarcina sp. P21c [PDYU]
975
1051
+
Arg
ACG
[ENA]
¡û
>W1810067462
PDYV01000042
Bacillota
Sporosarcina sp. P25 [PDYV]
260
184
-
Arg
ACG
[ENA]
¡û
>W1810067517
PDYW01000066
Bacillota
Sporosarcina sp. P26b [PDYW]
394
318
-
Arg
ACG
[ENA]
¡û
>W1810067573
PDYX01000050
Bacillota
Sporosarcina sp. P29 [PDYX]
973
1049
+
Arg
ACG
[ENA]
¡û
>W1810067627
PDYY01000032
Bacillota
Sporosarcina sp. P2 [PDYY]
421
345
-
Arg
ACG
[ENA]
¡û
>W1810067683
PDYZ01000057
Bacillota
Sporosarcina sp. P30 [PDYZ]
415
339
-
Arg
ACG
[ENA]
¡û
>W1810067729
PDZA01000039
Bacillota
Sporosarcina sp. P31 [PDZA]
15736
15660
-
Arg
ACG
[ENA]
¡û
>W1810067798
PDZB01000055
Bacillota
Sporosarcina sp. P32b [PDZB]
979
1055
+
Arg
ACG
[ENA]
¡û
>W1810067844
PDZC01000023
Bacillota
Sporosarcina sp. P34 [PDZC]
495
419
-
Arg
ACG
[ENA]
¡û
>W1810067890
PDZD01000061
Bacillota
Sporosarcina sp. P35 [PDZD]
656
580
-
Arg
ACG
[ENA]
¡û
>W1810067949
PDZE01000032
Bacillota
Sporosarcina sp. P3 [PDZE]
768
844
+
Arg
ACG
[ENA]
¡û
>W1810067999
PDZF01000033
Bacillota
Sporosarcina sp. P7 [PDZF]
778
702
-
Arg
ACG
[ENA]
¡û
>W1810389743
PXXX01000028
Bacillota
Lysinibacillus capsici PB300 [PXXX]
48319
48395
+
Arg
ACG
[ENA]
¡û
>W1810389770
PXXY01000007
Bacillota
Lysinibacillus fusiformis NRRL NRS-350 [PXXY]
266088
266164
+
Arg
ACG
[ENA]
¡û
>W1810424014
PYUE01000005
Bacillota
Lysinibacillus tabacifolii K3514 [PYUE]
345724
345648
-
Arg
ACG
[ENA]
¡û
>W1810424035
PYUE01000006
Bacillota
Lysinibacillus tabacifolii K3514 [PYUE]
261610
261686
+
Arg
ACG
[ENA]
¡û
>W1810424071
PYUE01000020
Bacillota
Lysinibacillus tabacifolii K3514 [PYUE]
168
92
-
Arg
ACG
[ENA]
¡û
>W1810426591
PYWH01000006
Bacillota
Lysinibacillus parviboronicapiens VT1066 [PYWH]
235023
235099
+
Arg
ACG
[ENA]
¡û
>W1810426599
PYWH01000030
Bacillota
Lysinibacillus parviboronicapiens VT1066 [PYWH]
240
316
+
Arg
ACG
[ENA]
¡û
>W1810426640
PYWH01000058
Bacillota
Lysinibacillus parviboronicapiens VT1066 [PYWH]
478
402
-
Arg
ACG
[ENA]
¡û
>W1810426672
PYWI01000022
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
70431
70507
+
Arg
ACG
[ENA]
¡û
>W1810426697
PYWI01000075
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
1172
1096
-
Arg
ACG
[ENA]
¡û
>W1810426714
PYWI01000083
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
454
378
-
Arg
ACG
[ENA]
¡û
>W1810672366
QJTJ01000045
Bacillota
Ureibacillus chungkukjangi KACC 16626 [QJTJ]
390
314
-
Arg
ACG
[ENA]
¡û
>W1810672374
QJTJ01000047
Bacillota
Ureibacillus chungkukjangi KACC 16626 [QJTJ]
13235
13159
-
Arg
ACG
[ENA]
¡û
>W1810672387
QJTJ01000052
Bacillota
Ureibacillus chungkukjangi KACC 16626 [QJTJ]
9661
9585
-
Arg
ACG
[ENA]
¡û
>C151073004
CP010820
Bacillota
Lysinibacillus fusiformis RB-21 [CP010820]
546861
546937
+
Arg
ACG
[Ensembl]
¡û
>ENV09003516
ADGO01078200
Compost metagenome contig00001
129
205
+
Arg
ACG
[ENA]
¡û
>C10113536
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
2154644
2154568
-
Arg
ACG
[Ensembl]
¡û
>W1511316014
JPVN01000060
Bacillota
Ureibacillus manganicus DSM 26584 [JPVN]
611
535
-
Arg
ACG
[ENA]
¡û
>W1511316052
JPVO01000003
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
223
147
-
Arg
ACG
[ENA]
¡û
>W1511316066
JPVO01000006
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
445
521
+
Arg
ACG
[ENA]
¡û
>W1511316091
JPVO01000050
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
223
147
-
Arg
ACG
[ENA]
¡û
>W1511316175
JPVQ01000083
Bacillota
Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 [JPVQ]
222
146
-
Arg
ACG
[ENA]
¡û
>W1511316193
JPVQ01000118
Bacillota
Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 [JPVQ]
935
859
-
Arg
ACG
[ENA]
¡û
>W1511316209
JPVQ01000120
Bacillota
Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 [JPVQ]
131
55
-
Arg
ACG
[ENA]
¡û
>C11122579
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
2444736
2444660
-
Arg
ACG
[Ensembl]
¡û
>W1511640669
LDUJ01000021
Bacillota
Lysinibacillus sp. LK3 [LDUJ]
273487
273563
+
Arg
ACG
[ENA]
¡û
>W1511705618
LGRV01000003
Bacillota
Lysinibacillus contaminans DSM 25560 [LGRV]
3009
3085
+
Arg
ACG
[ENA]
¡û
>W1511705647
LGRV01000005
Bacillota
Lysinibacillus contaminans DSM 25560 [LGRV]
208791
208867
+
Arg
ACG
[ENA]
¡û
>W11170972
AFPZ01000148
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
1067
1143
+
Arg
ACG
[ENA]
¡û
>W11170979
AFPZ01000150
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
870
946
+
Arg
ACG
[ENA]
¡û
>C161042964
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
281811
281887
+
Arg
ACG
[Ensembl]
¡û
>C161043001
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
3783459
3783535
+
Arg
ACG
[Ensembl]
¡û
>C161043009
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
3099567
3099491
-
Arg
ACG
[Ensembl]
¡û
>C161074254
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
162930
163006
+
Arg
ACG
-
¡û
>C161074270
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
3838492
3838568
+
Arg
ACG
-
¡û
>C161074282
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
3937789
3937865
+
Arg
ACG
-
¡û
>C161074330
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
2624817
2624741
-
Arg
ACG
-
¡û
>C161074349
CP014609
Bacillota
Solibacillus silvestris DSM 12223 [CP014609]
2621923
2621847
-
Arg
ACG
-
¡û
>W1610046530
BBCN01000003
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
177363
177439
+
Arg
ACG
[ENA]
¡û
>C131020961
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
2446021
2445945
-
Arg
ACG
-
¡û
>W1610650326
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
569
645
+
Arg
ACG
[ENA]
¡û
>W1610683539
LKPY01000024
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
394
318
-
Arg
ACG
[ENA]
¡û
>W1610789599
LOHZ01000030
Bacillota
Thermovenabulum gondwanense [LOHZ]
27095
27019
-
Arg
ACG
[ENA]
¡û
>W1611058525
MATO01000002
Bacillota
Caryophanon latum [MATO]
88125
88049
-
Arg
ACG
[ENA]
¡û
>W1611058542
MATO01000002
Bacillota
Caryophanon latum [MATO]
220
144
-
Arg
ACG
[ENA]
¡û
>W1710022933
AVCY01000006
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
223
147
-
Arg
ACG
[ENA]
¡û
>W1710022956
AVCY01000050
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
445
521
+
Arg
ACG
[ENA]
¡û
>W1710022968
AVCY01000053
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
223
147
-
Arg
ACG
[ENA]
¡û
>W1710022991
AVDA01000060
Bacillota
Ureibacillus manganicus DSM 26584 [AVDA]
611
535
-
Arg
ACG
[ENA]
¡û
>W1710043303
BBCN01000003
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
177363
177439
+
Arg
ACG
[ENA]
¡û
>W1710507864
FMVP01000005
Bacillota
Lysinibacillus fusiformis LD79 [FMVP]
255559
255635
+
Arg
ACG
[ENA]
¡û
>W1710510660
FMYD01000007
Bacillota
Lysinibacillus fusiformis BC-14 [FMYD]
245926
246002
+
Arg
ACG
[ENA]
¡û
>W1710575960
FOZQ01000006
Bacillota
Lysinibacillus sp. SG55 [FOZQ]
634
558
-
Arg
ACG
[ENA]
¡û
>W1710602661
FUYJ01000006
Bacillota
Sporosarcina newyorkensis [FUYJ]
215165
215089
-
Arg
ACG
[ENA]
¡û
>W1710625196
JOTQ01000005
Bacillota
Lysinibacillus sphaericus [JOTQ]
82678
82754
+
Arg
ACG
[ENA]
¡û
>W1710625237
JOTQ01000052
Bacillota
Lysinibacillus sphaericus [JOTQ]
419
343
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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