This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162264 (12 seq.)
>W1710893206
LNEN01000215
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
22879
22803
-
Arg
TCT
[ENA]
¡û
>WENV181191366
OEPS010066127
[OEPS] soil metagenome; soil
706
632
-
Arg
TCT
[ENA]
¡û
>WENV183725701
PJQF01008976
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
399
475
+
Arg
TCT
[ENA]
¡û
>C191088396
CP032382
Bacteroidota
Chryseolinea soli KIS68-18 [CP032382]
5001516
5001592
+
Arg
TCT
-
¡û
>W1810702006
QMFY01000010
Bacteroidota
Pseudochryseolinea flava SDU1-6 [QMFY]
1333
1259
-
Arg
TCT
[ENA]
¡û
>W2110445606
JAERRB010000013
Bacteroidota
Chryseolinea sp. Jin1 [JAERRB]
52648
52574
-
Arg
TCT
[ENA]
¡û
>W2110598329
JAHESD010000041
Bacteroidota
Fulvivirgaceae bacterium PWU20 [JAHESD]
2444
2370
-
Arg
TCT
[ENA]
¡û
>W2110598356
JAHESE010000002
Bacteroidota
Fulvivirgaceae bacterium PWU5 [JAHESE]
142053
141979
-
Arg
TCT
[ENA]
¡û
>W2110598410
JAHESF010000014
Bacteroidota
Fulvivirgaceae bacterium PWU4 [JAHESF]
19896
19820
-
Arg
TCT
[ENA]
¡û
>W1511397084
JTCM01000038
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
386870
386944
+
Arg
TCT
[ENA]
¡û
>W1610753472
LNEN01000215
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
22879
22803
-
Arg
TCT
[ENA]
¡û
>W1710585819
FQWQ01000004
Bacteroidota
Chryseolinea serpens [FQWQ]
418310
418384
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK