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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162277 (13 seq.)
>W141082433
AUMC01000010
Bdellovibrionota
Bacteriovorax sp. BAL6_X [AUMC]
176263
176187
-
Lys
TTT
[ENA]
¡û
>WENV170613155
FUWD012783125
[FUWD] metagenome; unknown
79
3
-
Lys
TTT
[ENA]
¢þ
>WENV170643448
JFJP01056523
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1364
1288
-
Lys
TTT
[ENA]
¢þ
>WENV170782199
MAAC01009563
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
240501
240577
+
Lys
TTT
[ENA]
¢þ
>WENV170782201
MAAC01009563
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
244582
244658
+
Lys
TTT
[ENA]
¢þ
>C181025424
CP017414
Bdellovibrionota
Halobacteriovorax marinus BE01 [CP017414]
545791
545867
+
Lys
TTT
-
¡û
>C181025426
CP017414
Bdellovibrionota
Halobacteriovorax marinus BE01 [CP017414]
546776
546852
+
Lys
TTT
-
¡û
>C181121439
CP025704
Bdellovibrionota
Bacteriovorax stolpii DSM 12778 [CP025704]
3153237
3153313
+
Lys
TTT
-
¡û
>C191055689
CP027772
Bdellovibrionota
Halobacteriovorax sp. BALOs_7 [CP027772]
419324
419248
-
Lys
TTT
-
¡û
>W1911654344
QDKL01000002
Bdellovibrionota
Halobacteriovorax vibrionivorans BALOs9 [QDKL]
862913
862989
+
Lys
TTT
[ENA]
¡û
>W1810233306
PPDJ01000003
Bdellovibrionota
Halobacteriovorax sp. DA5 [PPDJ]
196916
196840
-
Lys
TTT
[ENA]
¡û
>C11103545
FQ312005
Bdellovibrionota
Halobacteriovorax marinus SJ [FQ312005]
537423
537499
+
Lys
TTT
[Ensembl]
¡û
>C11103547
FQ312005
Bdellovibrionota
Halobacteriovorax marinus SJ [FQ312005]
538407
538483
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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