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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162284 (9 seq.)
>W1711723499
MTPJ01000016
Thermodesulfobacteriota
Lawsonia intracellularis [MTPJ]
65495
65571
+
Arg
CCG
[ENA]
¡û
>C011817
AM180252
Thermodesulfobacteriota
Lawsonia intracellularis PHE/MN1-00 [AM180252]
1099129
1099205
+
Arg
CCG
[Ensembl]
¡û
>W1810707513
QNHM01000001
Thermodesulfobacteriota
Lawsonia intracellularis Ib2/JPN [QNHM]
304730
304654
-
Arg
CCG
[ENA]
¡û
>W1810707544
QNHN01000001
Thermodesulfobacteriota
Lawsonia intracellularis Ni/JPN [QNHN]
422577
422653
+
Arg
CCG
[ENA]
¡û
>W1810707597
QNHO01000001
Thermodesulfobacteriota
Lawsonia intracellularis Fu/JPN [QNHO]
304709
304633
-
Arg
CCG
[ENA]
¡û
>W2011219203
PRDD01000004
Thermodesulfobacteriota
Lawsonia intracellularis LR189 [PRDD]
87210
87286
+
Arg
CCG
[ENA]
¡û
>W2110691849
JAIPUV010000002
Thermodesulfobacteriota
Lawsonia intracellularis CBNU010 [JAIPUV]
274269
274345
+
Arg
CCG
[ENA]
¡û
>C231508377
CP107054
Thermodesulfobacteriota
Lawsonia intracellularis PPE-GX01-2022 [CP107054]
1080611
1080687
+
Arg
CCG
-
¡û
>C131011812
CP004029
Thermodesulfobacteriota
Lawsonia intracellularis N343 [CP004029]
1099077
1099153
+
Arg
CCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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