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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162292 (5 seq.)
>WENV170706100
LNAP01001107
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23743
23667
-
Arg
TCT
[ENA]
¡û
>C181169397
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
1743266
1743342
+
Arg
TCT
-
¡û
>W1810721006
QNRQ01000006
Betaproteobacteria
Eoetvoesiella caeni DSM 25520 [QNRQ]
184213
184289
+
Arg
TCT
[ENA]
¡û
>W2010673996
JACCEU010000007
Betaproteobacteria
Eoetvoesia caeni PB3-7B [JACCEU]
184245
184321
+
Arg
TCT
[ENA]
¡û
>C231098302
CP063982
Betaproteobacteria
Orrella sp. f23 [CP063982]
909597
909521
-
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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