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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162309 (111 seq.)
>W1710991658
LPXW01000031
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
60017
60093
+
Met
CAT
[ENA]
¡û
>W1711008592
LQQC01000010
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
571762
571686
-
Met
CAT
[ENA]
¡û
>W1711096136
LTHM01000051
Actinomycetota
Brevibacterium sp. HMSC063G07 [LTHM]
68088
68012
-
Met
CAT
[ENA]
¡û
>W1711185842
LWNS01000050
Actinomycetota
Brevibacterium sp. HMSC08F02 [LWNS]
64090
64014
-
Met
CAT
[ENA]
¡û
>W1711187111
LWOU01000007
Actinomycetota
Brevibacterium sp. HMSC24B04 [LWOU]
212
136
-
Met
CAT
[ENA]
¡û
>W1711187204
LWOW01000045
Actinomycetota
Brevibacterium sp. HMSC22B09 [LWOW]
64603
64527
-
Met
CAT
[ENA]
¡û
>W1711187773
LWPT01000068
Actinomycetota
Brevibacterium sp. HMSC07C04 [LWPT]
70258
70182
-
Met
CAT
[ENA]
¡û
>W131217124
ATWL01000005
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
17420
17344
-
Met
CAT
[ENA]
¡û
>W131222646
AUBL01000007
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
61505
61581
+
Met
CAT
[ENA]
¡û
>W131001140
AGWL01000002
Actinomycetota
Actinobaculum massiliense ACS-171-V-Col2 [AGWL]
145671
145595
-
Met
CAT
[ENA]
¡û
>WENV180697756
ODDE01004016
[ODDE] human metagenome; G_DNA_Supragingival plaque
118
42
-
fMet
CAT
[ENA]
¡û
>WENV180721595
ODGL01002899
[ODGL] human metagenome; G_DNA_Subgingival plaque
2318
2242
-
fMet
CAT
[ENA]
¡û
>WENV180727330
ODGU01004352
[ODGU] human metagenome; G_DNA_Supragingival plaque
7533
7609
+
fMet
CAT
[ENA]
¡û
>WENV180732657
ODGY01002177
[ODGY] human metagenome; G_DNA_Supragingival plaque
3935
3859
-
fMet
CAT
[ENA]
¡û
>WENV180734347
ODGZ01006340
[ODGZ] human metagenome; G_DNA_Supragingival plaque
95
19
-
fMet
CAT
[ENA]
¡û
>WENV180735920
ODHB01001767
[ODHB] human metagenome; G_DNA_Supragingival plaque
3511
3587
+
fMet
CAT
[ENA]
¡û
>WENV180739397
ODHD01066766
[ODHD] human metagenome; G_DNA_Supragingival plaque
102
26
-
fMet
CAT
[ENA]
¡û
>WENV180765394
ODIB01142766
[ODIB] human metagenome; G_DNA_Supragingival plaque
121
197
+
fMet
CAT
[ENA]
¡û
>WENV180777226
ODIL01000520
[ODIL] human metagenome; G_DNA_Supragingival plaque
7873
7949
+
fMet
CAT
[ENA]
¡û
>WENV180778349
ODIM01003928
[ODIM] human metagenome; G_DNA_Supragingival plaque
105
29
-
fMet
CAT
[ENA]
¡û
>WENV180781814
ODIP01004762
[ODIP] human metagenome; G_DNA_Supragingival plaque
77
1
-
fMet
CAT
[ENA]
¡û
>WENV180787772
ODIS01014686
[ODIS] human metagenome; G_DNA_Supragingival plaque
222
298
+
fMet
CAT
[ENA]
¡û
>WENV180796388
ODJB01004187
[ODJB] human metagenome; G_DNA_Supragingival plaque
2881
2805
-
fMet
CAT
[ENA]
¡û
>WENV180797410
ODJB01056127
[ODJB] human metagenome; G_DNA_Supragingival plaque
1040
964
-
fMet
CAT
[ENA]
¡û
>WENV180804364
ODJG01002050
[ODJG] human metagenome; G_DNA_Supragingival plaque
714
638
-
fMet
CAT
[ENA]
¡û
>WENV180813899
ODJO01003627
[ODJO] human metagenome; G_DNA_Supragingival plaque
92
16
-
fMet
CAT
[ENA]
¡û
>WENV180834137
ODKD01003848
[ODKD] human metagenome; G_DNA_Supragingival plaque
3511
3587
+
fMet
CAT
[ENA]
¡û
>WENV180843582
ODKN01005437
[ODKN] human metagenome; G_DNA_Supragingival plaque
4198
4274
+
fMet
CAT
[ENA]
¡û
>WENV180846435
ODKT01011029
[ODKT] human metagenome; G_DNA_Supragingival plaque
3499
3575
+
fMet
CAT
[ENA]
¡û
>WENV180868464
ODLL01003370
[ODLL] human metagenome; G_DNA_Buccal mucosa
82
6
-
fMet
CAT
[ENA]
¡û
>WENV180888921
ODMN01006163
[ODMN] human metagenome; G_DNA_Supragingival plaque
3572
3648
+
fMet
CAT
[ENA]
¡û
>WENV180922364
ODTJ01003181
[ODTJ] human metagenome; G_DNA_Supragingival plaque
4587
4511
-
fMet
CAT
[ENA]
¡û
>WENV180925466
ODTK01193790
[ODTK] human metagenome; G_DNA_Supragingival plaque
106
182
+
fMet
CAT
[ENA]
¡û
>WENV180927343
ODTM01000261
[ODTM] human metagenome; G_DNA_Supragingival plaque
28966
29042
+
fMet
CAT
[ENA]
¡û
>WENV180940038
ODTX01192117
[ODTX] human metagenome; G_DNA_Supragingival plaque
160
236
+
fMet
CAT
[ENA]
¡û
>WENV180982056
ODVE01132770
[ODVE] human metagenome; G_DNA_Supragingival plaque
289
365
+
fMet
CAT
[ENA]
¡û
>WENV180984038
ODVF01086826
[ODVF] human metagenome; G_DNA_Supragingival plaque
395
471
+
fMet
CAT
[ENA]
¡û
>WENV180986602
ODVK01000148
[ODVK] human metagenome; G_DNA_Supragingival plaque
33654
33730
+
fMet
CAT
[ENA]
¡û
>WENV180998876
ODVT01002695
[ODVT] human metagenome; G_DNA_Buccal mucosa
4370
4294
-
fMet
CAT
[ENA]
¡û
>WENV181002515
ODVX01000544
[ODVX] human metagenome; G_DNA_Supragingival plaque
105
29
-
fMet
CAT
[ENA]
¡û
>WENV181007653
ODWE01000377
[ODWE] human metagenome; G_DNA_Supragingival plaque
31736
31660
-
fMet
CAT
[ENA]
¡û
>WENV181019449
ODWU01003329
[ODWU] human metagenome; G_DNA_Supragingival plaque
2866
2790
-
fMet
CAT
[ENA]
¡û
>WENV181063712
ODYP01002772
[ODYP] human metagenome; G_DNA_Supragingival plaque
4358
4282
-
fMet
CAT
[ENA]
¡û
>WENV181070421
OEAE01001386
[OEAE] human metagenome; G_DNA_Supragingival plaque
7797
7873
+
fMet
CAT
[ENA]
¡û
>WENV181076699
OEAP01011020
[OEAP] human metagenome; G_DNA_Supragingival plaque
3508
3584
+
fMet
CAT
[ENA]
¡û
>WENV181081847
OEAS01426638
[OEAS] human metagenome; G_DNA_Supragingival plaque
107
31
-
fMet
CAT
[ENA]
¡û
>WENV181082627
OEAV01000147
[OEAV] human metagenome; G_DNA_Supragingival plaque
31567
31643
+
fMet
CAT
[ENA]
¡û
>WENV181090339
OEBC01000232
[OEBC] human metagenome; G_DNA_Supragingival plaque
29047
29123
+
fMet
CAT
[ENA]
¡û
>WENV181146246
OEHQ01002236
[OEHQ] human metagenome; G_DNA_Supragingival plaque
86
10
-
fMet
CAT
[ENA]
¡û
>WENV181156000
OEIE01001577
[OEIE] human metagenome; G_DNA_Supragingival plaque
7529
7605
+
fMet
CAT
[ENA]
¡û
>WENV181160351
OEIK01006337
[OEIK] human metagenome; G_DNA_Supragingival plaque
110
34
-
fMet
CAT
[ENA]
¡û
>W141143129
AWSB01000053
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
3035
2959
-
Met
CAT
[ENA]
¡û
>W141243112
CAJD01000019
Actinomycetota
Brevibacterium ravenspurgense 5401308 [CAJD]
152039
151963
-
Met
CAT
[ENA]
¡û
>WENV182821814
OKBA01001932
[OKBA] human gut metagenome; human gut
1976
1901
-
fMet
CAT
[ENA]
¡û
>WENV183510585
OMHP01001109
[OMHP] human oral metagenome; human oral
243
319
+
fMet
CAT
[ENA]
¡û
>WENV183510685
OMHQ01002521
[OMHQ] human oral metagenome; human oral
349
425
+
fMet
CAT
[ENA]
¡û
>C191124724
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
2149313
2149239
-
Met
CAT
-
¡û
>C191124725
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
2148809
2148735
-
Met
CAT
-
¡û
>W1910442417
FWFF01000019
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
108101
108175
+
Met
CAT
[ENA]
¡û
>W1910500124
FXZA01000001
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
674705
674779
+
Met
CAT
[ENA]
¡û
>W1910500294
FXZD01000007
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
148519
148445
-
Met
CAT
[ENA]
¡û
>W1910500339
FXZE01000015
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
65802
65876
+
Met
CAT
[ENA]
¡û
>W1910500370
FXZF01000007
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
60803
60729
-
Met
CAT
[ENA]
¡û
>W1910500680
FXZM01000027
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
5472
5398
-
Met
CAT
[ENA]
¡û
>W1911594972
PNFZ01000007
Actinomycetota
Brevibacterium luteolum UMB0680 [PNFZ]
4654
4578
-
Met
CAT
[ENA]
¡û
>W1810185985
PKGO01000001
Actinomycetota
Brevibacterium ravenspurgense UMB0426 [PKGO]
103782
103858
+
Met
CAT
[ENA]
¡û
>W1810721387
QNRZ01000003
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
287397
287321
-
Met
CAT
[ENA]
¡û
>W1810721481
QNSB01000003
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
287288
287212
-
Met
CAT
[ENA]
¡û
>C151095938
CP012590
Actinomycetota
Actinomyces sp. oral taxon 414 F0588 [CP012590]
2167787
2167711
-
Met
CAT
-
¡û
>W2010303894
CABVPA010000001
Actinomycetota
Brevibacterium sp. Marseille-P9724 [CABVPA]
114375
114451
+
fMet
CAT
[ENA]
¡û
>W2010317478
CACRYJ010000046
Actinomycetota
Haloactinobacterium sp. F-300 [CACRYJ]
139118
139192
+
fMet
CAT
[ENA]
¡û
>W2010405781
FWFF01000019
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
108101
108175
+
fMet
CAT
[ENA]
¡û
>W2010419775
FXYY01000003
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
147495
147421
-
fMet
CAT
[ENA]
¡û
>W2010419856
FXZA01000001
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
674705
674779
+
fMet
CAT
[ENA]
¡û
>W2010420026
FXZD01000007
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
148519
148445
-
fMet
CAT
[ENA]
¡û
>W2010420071
FXZE01000015
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
65802
65876
+
fMet
CAT
[ENA]
¡û
>W2010420102
FXZF01000007
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
60803
60729
-
fMet
CAT
[ENA]
¡û
>W2010420412
FXZM01000027
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
5472
5398
-
fMet
CAT
[ENA]
¡û
>W2010606161
JABKDE010000006
Actinomycetota
Brevibacterium oceani BBH7 [JABKDE]
178895
178971
+
fMet
CAT
[ENA]
¡û
>W2010613874
JABSSX010000003
Actinomycetota
Brevibacterium permense VKM Ac-2280 [JABSSX]
236278
236204
-
fMet
CAT
[ENA]
¡û
>W2011204019
PNFZ01000007
Actinomycetota
Brevibacterium luteolum UMB0680 [PNFZ]
4654
4578
-
fMet
CAT
[ENA]
¡û
>W2011962999
VATX01000015
Actinomycetota
Glutamicibacter sp. V16R2B1 [VATX]
485398
485472
+
fMet
CAT
[ENA]
¡û
>W2011963000
VATX01000015
Actinomycetota
Glutamicibacter sp. V16R2B1 [VATX]
485902
485976
+
fMet
CAT
[ENA]
¡û
>W2011985463
VDMQ01000001
Actinomycetota
Brevibacterium sp. MG-1 [VDMQ]
191013
190939
-
fMet
CAT
[ENA]
¡û
>W2012044896
VIUB01000001
Actinomycetota
Brevibacterium jeotgali DSM 29217 [VIUB]
2227214
2227140
-
fMet
CAT
[ENA]
¡û
>W2012378359
WMHQ01000007
Actinomycetota
Haloactinobacterium sp. HY044 [WMHQ]
77863
77789
-
fMet
CAT
[ENA]
¡û
>W2012400930
WNXX01000015
Actinomycetota
Actinotalea caeni JCM 30447 [WNXX]
45174
45250
+
fMet
CAT
[ENA]
¡û
>W2012400976
WNXY01000007
Actinomycetota
Pseudactinotalea suaedae KACC 17839 [WNXY]
320478
320404
-
fMet
CAT
[ENA]
¡û
>W2012401051
WNXZ01000003
Actinomycetota
Pseudactinotalea terrae KACC 16542 [WNXZ]
452667
452741
+
fMet
CAT
[ENA]
¡û
>W2012470909
WWEQ01000016
Actinomycetota
Brevibacterium sp. 5221 [WWEQ]
30062
29988
-
fMet
CAT
[ENA]
¡û
>W2110023349
BMFY01000003
Actinomycetota
Sediminivirga luteola CGMCC 1.12785 [BMFY]
99190
99114
-
fMet
CAT
[ENA]
¡û
>W2110168718
JABASY010000002
Actinomycetota
Brevibacterium yomogidense DSM 24850 [JABASY]
194615
194691
+
fMet
CAT
[ENA]
¡û
>W2110569167
JAGSHT010000014
Actinomycetota
Ruania sp. N2-46 [JAGSHT]
118443
118369
-
fMet
CAT
[ENA]
¡û
>C201234626
CP050152
Actinomycetota
Brevibacterium sp. WO024 [CP050152]
1851567
1851493
-
fMet
CAT
-
¡û
>C201249965
CP051626
Actinomycetota
Brevibacterium sp. 'Marine' [CP051626]
1809840
1809766
-
fMet
CAT
-
¡û
>C211314533
CP072846
Actinomycetota
Brevibacterium oceani WW007 [CP072846]
1880340
1880264
-
fMet
CAT
-
¡û
>C231334603
CP093443
Actinomycetota
Brevibacterium sp. WHS-Z9 [CP093443]
1822259
1822185
-
fMet
CAT
-
¡û
>C231551875
CP113788
Actinomycetota
Brevibacterium sp. BRM-1 [CP113788]
247278
247352
+
fMet
CAT
-
¡û
>C241106215
CP046175
Actinomycetota
Occultella kanbiaonis HY164 [CP046175]
1472091
1472165
+
fMet
CAT
-
¡û
>C161078923
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
1812634
1812558
-
Met
CAT
[Ensembl]
¡û
>W1610041862
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
8843
8917
+
Met
CAT
[ENA]
¡û
>W1610041863
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
9347
9423
+
Met
CAT
[ENA]
¡û
>W1610069304
BCSJ01000011
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
216174
216100
-
Met
CAT
[ENA]
¡û
>W1610095255
CYUL01000005
Actinomycetota
Actinobaculum massiliense [CYUL]
513727
513803
+
Met
CAT
[ENA]
¡û
>W1610846273
LPXW01000031
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
60017
60093
+
Met
CAT
[ENA]
¡û
>W1610846332
LPXX01000015
Actinomycetota
Brevibacterium ravenspurgense 5401308 = CCUG 53855 [LPXX]
152163
152087
-
Met
CAT
[ENA]
¡û
>W1610857112
LQQC01000010
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
571762
571686
-
Met
CAT
[ENA]
¡û
>W1710038956
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
8843
8917
+
Met
CAT
[ENA]
¡û
>W1710038957
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
9347
9423
+
Met
CAT
[ENA]
¡û
>W1710066677
BCSJ01000011
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
216174
216100
-
Met
CAT
[ENA]
¡û
>W1710098050
CYUL01000005
Actinomycetota
Actinobaculum massiliense [CYUL]
513727
513803
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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