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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162311 (34 seq.)
>C012986
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
1943445
1943521
+
Arg
TCT
[Ensembl]
¡û
>WENV180042132
LNFX01000348
[LNFX] marine sediment metagenome; antarctic beach sand mud
5853
5929
+
Arg
TCT
[ENA]
¡û
>W141191376
AYOZ01000003
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
57057
57133
+
Arg
TCT
[ENA]
¡û
>W141284699
JAMB01000015
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
38697
38773
+
Arg
TCT
[ENA]
¡û
>C191039827
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2501097
2501021
-
Arg
TCT
-
¡û
>W09106464
AAVH01000026
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
24489
24565
+
Arg
TCT
[ENA]
¡û
>W1910584843
JYBL01000025
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
22414
22338
-
Arg
TCT
[ENA]
¡û
>W1910914850
NHTT01000001
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
453921
453997
+
Arg
TCT
[ENA]
¡û
>W1810606182
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
55584
55660
+
Arg
TCT
[ENA]
¡û
>W1810625242
QHJF01000019
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
55848
55924
+
Arg
TCT
[ENA]
¡û
>W1810676257
QKLW01000002
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
353941
353865
-
Arg
TCT
[ENA]
¡û
>W1810721663
QNSE01000001
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
406919
406995
+
Arg
TCT
[ENA]
¡û
>W1810759677
QPJQ01000004
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
108712
108636
-
Arg
TCT
[ENA]
¡û
>W2010584370
JABAEK010000003
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
33019
33095
+
Arg
TCT
[ENA]
¡û
>W2010764346
JYBL01000025
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
22414
22338
-
Arg
TCT
[ENA]
¡û
>W2010967710
NHTT01000001
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
453921
453997
+
Arg
TCT
[ENA]
¡û
>W2011222074
PTXN01000014
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
133369
133293
-
Arg
TCT
[ENA]
¡û
>W2011431051
RIZG01000004
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
23179
23255
+
Arg
TCT
[ENA]
¡û
>W2011431134
RIZH01000016
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
56382
56458
+
Arg
TCT
[ENA]
¡û
>W2012132078
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
1284078
1284154
+
Arg
TCT
[ENA]
¡û
>W2110030223
BMLJ01000012
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
91766
91842
+
Arg
TCT
[ENA]
¡û
>W2110429618
JAEMUI010000002
Gammaproteobacteria
Marinomonas spartinae USM8 [JAEMUI]
119527
119603
+
Arg
TCT
[ENA]
¡û
>W2110571030
JAGSSV010000010
Gammaproteobacteria
Marinomonas vulgaris A79 [JAGSSV]
43881
43957
+
Arg
TCT
[ENA]
¡û
>C211142028
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
2789773
2789697
-
Arg
TCT
-
¡û
>C211273614
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
555539
555463
-
Arg
TCT
-
¡û
>W2110716903
JAJATW010000016
Gammaproteobacteria
Marinomonas sp. E8 [JAJATW]
21335
21259
-
Arg
TCT
[ENA]
¡û
>C231129701
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
2807249
2807325
+
Arg
TCT
-
¡û
>C231130927
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
2661332
2661256
-
Arg
TCT
-
¡û
>C241010746
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
1306849
1306925
+
Arg
TCT
-
¡û
>C241166590
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
2503622
2503546
-
Arg
TCT
-
¡û
>W1610503684
FLOB01000003
Gammaproteobacteria
Marinomonas spartinae [FLOB]
245400
245324
-
Arg
TCT
[ENA]
¡û
>W1610504038
FLOE01000022
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
128076
128152
+
Arg
TCT
[ENA]
¡û
>W1710496513
FLOB01000003
Gammaproteobacteria
Marinomonas spartinae [FLOB]
245400
245324
-
Arg
TCT
[ENA]
¡û
>W1710583948
FQVF01000002
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
451756
451832
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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